Gene : Solyc08g041870.2 S. lycopersicum ITAG2.4
Defline:  (1 of 1) K00811 - aspartate aminotransferase, chloroplastic (ASP5) Description:  Aspartate aminotransferase (AHRD V1 **** Q2XTE6_SOLTU); contains Interpro domain(s) IPR000796 Aspartate/other aminotransferase
Genomic Order:  748 Name:  ? Solyc08g041870.2
Secondary Identifier:  ? PAC:36150713
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Sequence Feature Displayer

Ontology Annotation Displayer

6 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Slycopersicum ASPARTATE-DEG1-PWY Solanum lycopersicum pathologic  
Slycopersicum ASPARTATESYN-PWY Solanum lycopersicum pathologic  
Slycopersicum PWY-3001 Solanum lycopersicum pathologic  
Slycopersicum PWY-7115 Solanum lycopersicum pathologic  
Slycopersicum PWY-7117 Solanum lycopersicum pathologic  
Slycopersicum THRESYN-PWY Solanum lycopersicum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc08g041870.2 0.5kb upstream 0.5kb upstream 6295 true SL2.50ch08: 25450017-25456311 Solanum lycopersicum
Solyc08g041870.2 0.5kb upstream 0.5kb upstream 500 false SL2.50ch08: 25450017-25450516 Solanum lycopersicum
Solyc08g041870.2 0.5kb downstream 0.5kb downstream 6295 true SL2.50ch08: 25450517-25456811 Solanum lycopersicum
Solyc08g041870.2 0.5kb downstream 0.5kb downstream 500 false SL2.50ch08: 25456312-25456811 Solanum lycopersicum
Solyc08g041870.2 1.0kb upstream 1.0kb upstream 6795 true SL2.50ch08: 25449517-25456311 Solanum lycopersicum
Solyc08g041870.2 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch08: 25449517-25450516 Solanum lycopersicum
Solyc08g041870.2 1.0kb downstream 1.0kb downstream 6795 true SL2.50ch08: 25450517-25457311 Solanum lycopersicum
Solyc08g041870.2 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch08: 25456312-25457311 Solanum lycopersicum
Solyc08g041870.2 2.0kb upstream 2.0kb upstream 7795 true SL2.50ch08: 25448517-25456311 Solanum lycopersicum
Solyc08g041870.2 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch08: 25448517-25450516 Solanum lycopersicum
Solyc08g041870.2 2.0kb downstream 2.0kb downstream 7795 true SL2.50ch08: 25450517-25458311 Solanum lycopersicum
Solyc08g041870.2 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch08: 25456312-25458311 Solanum lycopersicum
Solyc08g041870.2 5.0kb upstream 5.0kb upstream 10795 true SL2.50ch08: 25445517-25456311 Solanum lycopersicum
Solyc08g041870.2 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch08: 25445517-25450516 Solanum lycopersicum
Solyc08g041870.2 5.0kb downstream 5.0kb downstream 10795 true SL2.50ch08: 25450517-25461311 Solanum lycopersicum
Solyc08g041870.2 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch08: 25456312-25461311 Solanum lycopersicum
Solyc08g041870.2 10.0kb upstream 10.0kb upstream 15795 true SL2.50ch08: 25440517-25456311 Solanum lycopersicum
Solyc08g041870.2 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch08: 25440517-25450516 Solanum lycopersicum
Solyc08g041870.2 10.0kb downstream 10.0kb downstream 15795 true SL2.50ch08: 25450517-25466311 Solanum lycopersicum
Solyc08g041870.2 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch08: 25456312-25466311 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121474352 5263 Asterids View MSA
123740507 5271 Pentapetalae View MSA
122797537 5272 Eudicot View MSA
122048100 5273 Angiosperm View MSA
121346908 5274 Embryophyte View MSA
123424622 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain