Gene : Solyc07g008950.2 S. lycopersicum ITAG2.4
Defline:  (1 of 1) PTHR11946:SF86 - METHIONINE--TRNA LIGASE, CYTOPLASMIC Description:  Methionyl-tRNA synthetase (AHRD V1 ***- B2W192_PYRTR); contains Interpro domain(s) IPR015413 Aminoacyl-tRNA synthetase, class I (M)
Genomic Order:  396 Name:  ? Solyc07g008950.2
Secondary Identifier:  ? PAC:36161481
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Slycopersicum TRNA-CHARGING-PWY Solanum lycopersicum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc07g008950.2 0.5kb upstream 0.5kb upstream 10258 true SL2.50ch07: 3973124-3983381 Solanum lycopersicum
Solyc07g008950.2 0.5kb upstream 0.5kb upstream 500 false SL2.50ch07: 3982882-3983381 Solanum lycopersicum
Solyc07g008950.2 0.5kb downstream 0.5kb downstream 10258 true SL2.50ch07: 3972624-3982881 Solanum lycopersicum
Solyc07g008950.2 0.5kb downstream 0.5kb downstream 500 false SL2.50ch07: 3972624-3973123 Solanum lycopersicum
Solyc07g008950.2 1.0kb upstream 1.0kb upstream 10758 true SL2.50ch07: 3973124-3983881 Solanum lycopersicum
Solyc07g008950.2 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch07: 3982882-3983881 Solanum lycopersicum
Solyc07g008950.2 1.0kb downstream 1.0kb downstream 10758 true SL2.50ch07: 3972124-3982881 Solanum lycopersicum
Solyc07g008950.2 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch07: 3972124-3973123 Solanum lycopersicum
Solyc07g008950.2 2.0kb upstream 2.0kb upstream 11758 true SL2.50ch07: 3973124-3984881 Solanum lycopersicum
Solyc07g008950.2 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch07: 3982882-3984881 Solanum lycopersicum
Solyc07g008950.2 2.0kb downstream 2.0kb downstream 11758 true SL2.50ch07: 3971124-3982881 Solanum lycopersicum
Solyc07g008950.2 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch07: 3971124-3973123 Solanum lycopersicum
Solyc07g008950.2 5.0kb upstream 5.0kb upstream 14758 true SL2.50ch07: 3973124-3987881 Solanum lycopersicum
Solyc07g008950.2 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch07: 3982882-3987881 Solanum lycopersicum
Solyc07g008950.2 5.0kb downstream 5.0kb downstream 14758 true SL2.50ch07: 3968124-3982881 Solanum lycopersicum
Solyc07g008950.2 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch07: 3968124-3973123 Solanum lycopersicum
Solyc07g008950.2 10.0kb upstream 10.0kb upstream 19758 true SL2.50ch07: 3973124-3992881 Solanum lycopersicum
Solyc07g008950.2 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch07: 3982882-3992881 Solanum lycopersicum
Solyc07g008950.2 10.0kb downstream 10.0kb downstream 19758 true SL2.50ch07: 3963124-3982881 Solanum lycopersicum
Solyc07g008950.2 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch07: 3963124-3973123 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121474790 5263 Asterids View MSA
123739463 5271 Pentapetalae View MSA
122793532 5272 Eudicot View MSA
122041539 5273 Angiosperm View MSA
121348816 5274 Embryophyte View MSA
123428788 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain