Gene : Solyc07g008890.1 S. lycopersicum ITAG2.4
Defline:  (1 of 174) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Description:  Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M989_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat
Genomic Order:  390 Name:  ? Solyc07g008890.1
Secondary Identifier:  ? PAC:36160923
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Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc07g008890.1 0.5kb upstream 0.5kb upstream 2273 true SL2.50ch07: 3860404-3862676 Solanum lycopersicum
Solyc07g008890.1 0.5kb upstream 0.5kb upstream 500 false SL2.50ch07: 3862177-3862676 Solanum lycopersicum
Solyc07g008890.1 0.5kb downstream 0.5kb downstream 2273 true SL2.50ch07: 3859904-3862176 Solanum lycopersicum
Solyc07g008890.1 0.5kb downstream 0.5kb downstream 500 false SL2.50ch07: 3859904-3860403 Solanum lycopersicum
Solyc07g008890.1 1.0kb upstream 1.0kb upstream 2773 true SL2.50ch07: 3860404-3863176 Solanum lycopersicum
Solyc07g008890.1 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch07: 3862177-3863176 Solanum lycopersicum
Solyc07g008890.1 1.0kb downstream 1.0kb downstream 2773 true SL2.50ch07: 3859404-3862176 Solanum lycopersicum
Solyc07g008890.1 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch07: 3859404-3860403 Solanum lycopersicum
Solyc07g008890.1 2.0kb upstream 2.0kb upstream 3773 true SL2.50ch07: 3860404-3864176 Solanum lycopersicum
Solyc07g008890.1 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch07: 3862177-3864176 Solanum lycopersicum
Solyc07g008890.1 2.0kb downstream 2.0kb downstream 3773 true SL2.50ch07: 3858404-3862176 Solanum lycopersicum
Solyc07g008890.1 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch07: 3858404-3860403 Solanum lycopersicum
Solyc07g008890.1 5.0kb upstream 5.0kb upstream 6773 true SL2.50ch07: 3860404-3867176 Solanum lycopersicum
Solyc07g008890.1 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch07: 3862177-3867176 Solanum lycopersicum
Solyc07g008890.1 5.0kb downstream 5.0kb downstream 6773 true SL2.50ch07: 3855404-3862176 Solanum lycopersicum
Solyc07g008890.1 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch07: 3855404-3860403 Solanum lycopersicum
Solyc07g008890.1 10.0kb upstream 10.0kb upstream 11773 true SL2.50ch07: 3860404-3872176 Solanum lycopersicum
Solyc07g008890.1 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch07: 3862177-3872176 Solanum lycopersicum
Solyc07g008890.1 10.0kb downstream 10.0kb downstream 11773 true SL2.50ch07: 3850404-3862176 Solanum lycopersicum
Solyc07g008890.1 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch07: 3850404-3860403 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121473839 5263 Asterids View MSA
123744781 5271 Pentapetalae View MSA
122795456 5272 Eudicot View MSA
122048735 5273 Angiosperm View MSA
121311088 5274 Embryophyte View MSA
123348435 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain