Gene : Solyc07g016130.1 S. lycopersicum ITAG2.4
Defline:  (1 of 7) PTHR22763:SF46 - PROTEIN SAN1 Description:  RING finger protein 6 (AHRD V1 *--- RNF6_HUMAN); contains Interpro domain(s) IPR001841 Zinc finger, RING-type
Genomic Order:  513 Name:  ? Solyc07g016130.1
Secondary Identifier:  ? PAC:36161920
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Slycopersicum PWY-7511 Solanum lycopersicum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc07g016130.1 0.5kb upstream 0.5kb upstream 1016 true SL2.50ch07: 6307453-6308468 Solanum lycopersicum
Solyc07g016130.1 0.5kb upstream 0.5kb upstream 500 false SL2.50ch07: 6307969-6308468 Solanum lycopersicum
Solyc07g016130.1 0.5kb downstream 0.5kb downstream 1016 true SL2.50ch07: 6306953-6307968 Solanum lycopersicum
Solyc07g016130.1 0.5kb downstream 0.5kb downstream 500 false SL2.50ch07: 6306953-6307452 Solanum lycopersicum
Solyc07g016130.1 1.0kb upstream 1.0kb upstream 1516 true SL2.50ch07: 6307453-6308968 Solanum lycopersicum
Solyc07g016130.1 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch07: 6307969-6308968 Solanum lycopersicum
Solyc07g016130.1 1.0kb downstream 1.0kb downstream 1516 true SL2.50ch07: 6306453-6307968 Solanum lycopersicum
Solyc07g016130.1 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch07: 6306453-6307452 Solanum lycopersicum
Solyc07g016130.1 2.0kb upstream 2.0kb upstream 2516 true SL2.50ch07: 6307453-6309968 Solanum lycopersicum
Solyc07g016130.1 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch07: 6307969-6309968 Solanum lycopersicum
Solyc07g016130.1 2.0kb downstream 2.0kb downstream 2516 true SL2.50ch07: 6305453-6307968 Solanum lycopersicum
Solyc07g016130.1 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch07: 6305453-6307452 Solanum lycopersicum
Solyc07g016130.1 5.0kb upstream 5.0kb upstream 5516 true SL2.50ch07: 6307453-6312968 Solanum lycopersicum
Solyc07g016130.1 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch07: 6307969-6312968 Solanum lycopersicum
Solyc07g016130.1 5.0kb downstream 5.0kb downstream 5516 true SL2.50ch07: 6302453-6307968 Solanum lycopersicum
Solyc07g016130.1 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch07: 6302453-6307452 Solanum lycopersicum
Solyc07g016130.1 10.0kb upstream 10.0kb upstream 10516 true SL2.50ch07: 6307453-6317968 Solanum lycopersicum
Solyc07g016130.1 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch07: 6307969-6317968 Solanum lycopersicum
Solyc07g016130.1 10.0kb downstream 10.0kb downstream 10516 true SL2.50ch07: 6297453-6307968 Solanum lycopersicum
Solyc07g016130.1 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch07: 6297453-6307452 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121369145 5263 Asterids Singleton cluster - no MSA
123753333 5271 Pentapetalae View MSA
122775058 5272 Eudicot View MSA
122051603 5273 Angiosperm View MSA
123429130 5275 Viridiplantae View MSA
121351603 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain