Gene : Solyc08g077140.1 S. lycopersicum ITAG2.4
Defline:  (1 of 6) PF01535//PF13812 - PPR repeat (PPR) // Pentatricopeptide repeat domain (PPR_3) Description:  Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MRC5_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat
Genomic Order:  1842 Name:  ? Solyc08g077140.1
Secondary Identifier:  ? PAC:36151310
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc08g077140.1 0.5kb upstream 0.5kb upstream 1313 true SL2.50ch08: 61046409-61047721 Solanum lycopersicum
Solyc08g077140.1 0.5kb upstream 0.5kb upstream 500 false SL2.50ch08: 61046409-61046908 Solanum lycopersicum
Solyc08g077140.1 0.5kb downstream 0.5kb downstream 1313 true SL2.50ch08: 61046909-61048221 Solanum lycopersicum
Solyc08g077140.1 0.5kb downstream 0.5kb downstream 500 false SL2.50ch08: 61047722-61048221 Solanum lycopersicum
Solyc08g077140.1 1.0kb upstream 1.0kb upstream 1813 true SL2.50ch08: 61045909-61047721 Solanum lycopersicum
Solyc08g077140.1 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch08: 61045909-61046908 Solanum lycopersicum
Solyc08g077140.1 1.0kb downstream 1.0kb downstream 1813 true SL2.50ch08: 61046909-61048721 Solanum lycopersicum
Solyc08g077140.1 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch08: 61047722-61048721 Solanum lycopersicum
Solyc08g077140.1 2.0kb upstream 2.0kb upstream 2813 true SL2.50ch08: 61044909-61047721 Solanum lycopersicum
Solyc08g077140.1 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch08: 61044909-61046908 Solanum lycopersicum
Solyc08g077140.1 2.0kb downstream 2.0kb downstream 2813 true SL2.50ch08: 61046909-61049721 Solanum lycopersicum
Solyc08g077140.1 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch08: 61047722-61049721 Solanum lycopersicum
Solyc08g077140.1 5.0kb upstream 5.0kb upstream 5813 true SL2.50ch08: 61041909-61047721 Solanum lycopersicum
Solyc08g077140.1 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch08: 61041909-61046908 Solanum lycopersicum
Solyc08g077140.1 5.0kb downstream 5.0kb downstream 5813 true SL2.50ch08: 61046909-61052721 Solanum lycopersicum
Solyc08g077140.1 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch08: 61047722-61052721 Solanum lycopersicum
Solyc08g077140.1 10.0kb upstream 10.0kb upstream 10813 true SL2.50ch08: 61036909-61047721 Solanum lycopersicum
Solyc08g077140.1 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch08: 61036909-61046908 Solanum lycopersicum
Solyc08g077140.1 10.0kb downstream 10.0kb downstream 10813 true SL2.50ch08: 61046909-61057721 Solanum lycopersicum
Solyc08g077140.1 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch08: 61047722-61057721 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029535 5273 Angiosperm View MSA
121369780 5263 Asterids Singleton cluster - no MSA
123752505 5271 Pentapetalae View MSA
122774601 5272 Eudicot View MSA
121298852 5274 Embryophyte View MSA
123336794 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain