Gene : Solyc08g078430.2 S. lycopersicum ITAG2.4
Defline:  (1 of 2) K12844 - U4/U6 small nuclear ribonucleoprotein PRP31 (PRPF31) Description:  Pre-mRNA processing ribonucleoprotein binding region-containing protein (AHRD V1 **-* A7AUH1_BABBO); contains Interpro domain(s) IPR019175 Prp31 C-terminal
Genomic Order:  1970 Name:  ? Solyc08g078430.2
Secondary Identifier:  ? PAC:36149207
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc08g078430.2 0.5kb upstream 0.5kb upstream 4731 true SL2.50ch08: 62240043-62244773 Solanum lycopersicum
Solyc08g078430.2 0.5kb upstream 0.5kb upstream 500 false SL2.50ch08: 62244274-62244773 Solanum lycopersicum
Solyc08g078430.2 0.5kb downstream 0.5kb downstream 4731 true SL2.50ch08: 62239543-62244273 Solanum lycopersicum
Solyc08g078430.2 0.5kb downstream 0.5kb downstream 500 false SL2.50ch08: 62239543-62240042 Solanum lycopersicum
Solyc08g078430.2 1.0kb upstream 1.0kb upstream 5231 true SL2.50ch08: 62240043-62245273 Solanum lycopersicum
Solyc08g078430.2 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch08: 62244274-62245273 Solanum lycopersicum
Solyc08g078430.2 1.0kb downstream 1.0kb downstream 5231 true SL2.50ch08: 62239043-62244273 Solanum lycopersicum
Solyc08g078430.2 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch08: 62239043-62240042 Solanum lycopersicum
Solyc08g078430.2 2.0kb upstream 2.0kb upstream 6231 true SL2.50ch08: 62240043-62246273 Solanum lycopersicum
Solyc08g078430.2 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch08: 62244274-62246273 Solanum lycopersicum
Solyc08g078430.2 2.0kb downstream 2.0kb downstream 6231 true SL2.50ch08: 62238043-62244273 Solanum lycopersicum
Solyc08g078430.2 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch08: 62238043-62240042 Solanum lycopersicum
Solyc08g078430.2 5.0kb upstream 5.0kb upstream 9231 true SL2.50ch08: 62240043-62249273 Solanum lycopersicum
Solyc08g078430.2 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch08: 62244274-62249273 Solanum lycopersicum
Solyc08g078430.2 5.0kb downstream 5.0kb downstream 9231 true SL2.50ch08: 62235043-62244273 Solanum lycopersicum
Solyc08g078430.2 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch08: 62235043-62240042 Solanum lycopersicum
Solyc08g078430.2 10.0kb upstream 10.0kb upstream 14231 true SL2.50ch08: 62240043-62254273 Solanum lycopersicum
Solyc08g078430.2 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch08: 62244274-62254273 Solanum lycopersicum
Solyc08g078430.2 10.0kb downstream 10.0kb downstream 14231 true SL2.50ch08: 62230043-62244273 Solanum lycopersicum
Solyc08g078430.2 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch08: 62230043-62240042 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121469903 5263 Asterids View MSA
123753460 5271 Pentapetalae View MSA
122792370 5272 Eudicot View MSA
122045972 5273 Angiosperm View MSA
123428992 5275 Viridiplantae View MSA
121345979 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain