Gene : Solyc08g077930.2 S. lycopersicum ITAG2.4
Defline:  (1 of 2) 1.1.1.41//1.1.1.85 - Isocitrate dehydrogenase (NAD(+)) / Nicotinamide adenine dinucleotide isocitrate dehydrogenase // 3-isopropylmalate dehydrogenase / IMDH Description:  Isocitrate dehydrogenase (AHRD V1 ***- Q17P79_AEDAE); contains Interpro domain(s) IPR004434 Isocitrate dehydrogenase NAD-dependent, mitochondrial
Genomic Order:  1920 Name:  ? Solyc08g077930.2
Secondary Identifier:  ? PAC:36149224
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Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Slycopersicum BRANCHED-CHAIN-AA-SYN-PWY Solanum lycopersicum pathologic  
Slycopersicum LEUSYN-PWY Solanum lycopersicum pathologic  
Slycopersicum PWY-5464 Solanum lycopersicum pathologic  
Slycopersicum PWY-5690 Solanum lycopersicum pathologic  
Slycopersicum PWY-6549 Solanum lycopersicum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc08g077930.2 0.5kb upstream 0.5kb upstream 5994 true SL2.50ch08: 61823265-61829258 Solanum lycopersicum
Solyc08g077930.2 0.5kb upstream 0.5kb upstream 500 false SL2.50ch08: 61828759-61829258 Solanum lycopersicum
Solyc08g077930.2 0.5kb downstream 0.5kb downstream 5994 true SL2.50ch08: 61822765-61828758 Solanum lycopersicum
Solyc08g077930.2 0.5kb downstream 0.5kb downstream 500 false SL2.50ch08: 61822765-61823264 Solanum lycopersicum
Solyc08g077930.2 1.0kb upstream 1.0kb upstream 6494 true SL2.50ch08: 61823265-61829758 Solanum lycopersicum
Solyc08g077930.2 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch08: 61828759-61829758 Solanum lycopersicum
Solyc08g077930.2 1.0kb downstream 1.0kb downstream 6494 true SL2.50ch08: 61822265-61828758 Solanum lycopersicum
Solyc08g077930.2 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch08: 61822265-61823264 Solanum lycopersicum
Solyc08g077930.2 2.0kb upstream 2.0kb upstream 7494 true SL2.50ch08: 61823265-61830758 Solanum lycopersicum
Solyc08g077930.2 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch08: 61828759-61830758 Solanum lycopersicum
Solyc08g077930.2 2.0kb downstream 2.0kb downstream 7494 true SL2.50ch08: 61821265-61828758 Solanum lycopersicum
Solyc08g077930.2 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch08: 61821265-61823264 Solanum lycopersicum
Solyc08g077930.2 5.0kb upstream 5.0kb upstream 10494 true SL2.50ch08: 61823265-61833758 Solanum lycopersicum
Solyc08g077930.2 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch08: 61828759-61833758 Solanum lycopersicum
Solyc08g077930.2 5.0kb downstream 5.0kb downstream 10494 true SL2.50ch08: 61818265-61828758 Solanum lycopersicum
Solyc08g077930.2 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch08: 61818265-61823264 Solanum lycopersicum
Solyc08g077930.2 10.0kb upstream 10.0kb upstream 15494 true SL2.50ch08: 61823265-61838758 Solanum lycopersicum
Solyc08g077930.2 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch08: 61828759-61838758 Solanum lycopersicum
Solyc08g077930.2 10.0kb downstream 10.0kb downstream 15494 true SL2.50ch08: 61813265-61828758 Solanum lycopersicum
Solyc08g077930.2 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch08: 61813265-61823264 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121479279 5263 Asterids View MSA
123739712 5271 Pentapetalae View MSA
122792664 5272 Eudicot View MSA
122041698 5273 Angiosperm View MSA
121349734 5274 Embryophyte View MSA
123425496 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain