Gene : Solyc07g055840.2 S. lycopersicum ITAG2.4
Defline:  (1 of 3) 2.3.3.1 - Citrate (Si)-synthase / Citrate oxaloacetate-lyase ((pro-3S)-CH(2)COO->acetyl-CoA) Description:  Citrate synthase (AHRD V1 **** B9IFM7_POPTR); contains Interpro domain(s) IPR010953 Citrate synthase, type II
Genomic Order:  1912 Name:  ? Solyc07g055840.2
Secondary Identifier:  ? PAC:36162137
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Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Slycopersicum GLYOXYLATE-BYPASS Solanum lycopersicum pathologic  
Slycopersicum PWY-5464 Solanum lycopersicum pathologic  
Slycopersicum PWY-561 Solanum lycopersicum pathologic  
Slycopersicum PWY-5690 Solanum lycopersicum pathologic  
Slycopersicum PWY-6549 Solanum lycopersicum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc07g055840.2 0.5kb upstream 0.5kb upstream 8874 true SL2.50ch07: 63757492-63766365 Solanum lycopersicum
Solyc07g055840.2 0.5kb upstream 0.5kb upstream 500 false SL2.50ch07: 63765866-63766365 Solanum lycopersicum
Solyc07g055840.2 0.5kb downstream 0.5kb downstream 8874 true SL2.50ch07: 63756992-63765865 Solanum lycopersicum
Solyc07g055840.2 0.5kb downstream 0.5kb downstream 500 false SL2.50ch07: 63756992-63757491 Solanum lycopersicum
Solyc07g055840.2 1.0kb upstream 1.0kb upstream 9374 true SL2.50ch07: 63757492-63766865 Solanum lycopersicum
Solyc07g055840.2 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch07: 63765866-63766865 Solanum lycopersicum
Solyc07g055840.2 1.0kb downstream 1.0kb downstream 9374 true SL2.50ch07: 63756492-63765865 Solanum lycopersicum
Solyc07g055840.2 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch07: 63756492-63757491 Solanum lycopersicum
Solyc07g055840.2 2.0kb upstream 2.0kb upstream 10374 true SL2.50ch07: 63757492-63767865 Solanum lycopersicum
Solyc07g055840.2 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch07: 63765866-63767865 Solanum lycopersicum
Solyc07g055840.2 2.0kb downstream 2.0kb downstream 10374 true SL2.50ch07: 63755492-63765865 Solanum lycopersicum
Solyc07g055840.2 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch07: 63755492-63757491 Solanum lycopersicum
Solyc07g055840.2 5.0kb upstream 5.0kb upstream 13374 true SL2.50ch07: 63757492-63770865 Solanum lycopersicum
Solyc07g055840.2 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch07: 63765866-63770865 Solanum lycopersicum
Solyc07g055840.2 5.0kb downstream 5.0kb downstream 13374 true SL2.50ch07: 63752492-63765865 Solanum lycopersicum
Solyc07g055840.2 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch07: 63752492-63757491 Solanum lycopersicum
Solyc07g055840.2 10.0kb upstream 10.0kb upstream 18374 true SL2.50ch07: 63757492-63775865 Solanum lycopersicum
Solyc07g055840.2 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch07: 63765866-63775865 Solanum lycopersicum
Solyc07g055840.2 10.0kb downstream 10.0kb downstream 18374 true SL2.50ch07: 63747492-63765865 Solanum lycopersicum
Solyc07g055840.2 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch07: 63747492-63757491 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121386912 5263 Asterids View MSA
123748183 5271 Pentapetalae View MSA
122794190 5272 Eudicot View MSA
122044026 5273 Angiosperm View MSA
121344650 5274 Embryophyte View MSA
123424100 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain