Gene : Solyc07g054580.2 S. lycopersicum ITAG2.4
Defline:  (1 of 8) K14487 - auxin responsive GH3 gene family (GH3) Description:  GH3 family protein (AHRD V1 ***- B9N2A3_POPTR); contains Interpro domain(s) IPR004993 GH3 auxin-responsive promoter
Genomic Order:  1792 Name:  ? Solyc07g054580.2
Secondary Identifier:  ? PAC:36160139
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc07g054580.2 0.5kb upstream 0.5kb upstream 4344 true SL2.50ch07: 62854900-62859243 Solanum lycopersicum
Solyc07g054580.2 0.5kb upstream 0.5kb upstream 500 false SL2.50ch07: 62858744-62859243 Solanum lycopersicum
Solyc07g054580.2 0.5kb downstream 0.5kb downstream 4344 true SL2.50ch07: 62854400-62858743 Solanum lycopersicum
Solyc07g054580.2 0.5kb downstream 0.5kb downstream 500 false SL2.50ch07: 62854400-62854899 Solanum lycopersicum
Solyc07g054580.2 1.0kb upstream 1.0kb upstream 4844 true SL2.50ch07: 62854900-62859743 Solanum lycopersicum
Solyc07g054580.2 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch07: 62858744-62859743 Solanum lycopersicum
Solyc07g054580.2 1.0kb downstream 1.0kb downstream 4844 true SL2.50ch07: 62853900-62858743 Solanum lycopersicum
Solyc07g054580.2 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch07: 62853900-62854899 Solanum lycopersicum
Solyc07g054580.2 2.0kb upstream 2.0kb upstream 5844 true SL2.50ch07: 62854900-62860743 Solanum lycopersicum
Solyc07g054580.2 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch07: 62858744-62860743 Solanum lycopersicum
Solyc07g054580.2 2.0kb downstream 2.0kb downstream 5844 true SL2.50ch07: 62852900-62858743 Solanum lycopersicum
Solyc07g054580.2 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch07: 62852900-62854899 Solanum lycopersicum
Solyc07g054580.2 5.0kb upstream 5.0kb upstream 8844 true SL2.50ch07: 62854900-62863743 Solanum lycopersicum
Solyc07g054580.2 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch07: 62858744-62863743 Solanum lycopersicum
Solyc07g054580.2 5.0kb downstream 5.0kb downstream 8844 true SL2.50ch07: 62849900-62858743 Solanum lycopersicum
Solyc07g054580.2 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch07: 62849900-62854899 Solanum lycopersicum
Solyc07g054580.2 10.0kb upstream 10.0kb upstream 13844 true SL2.50ch07: 62854900-62868743 Solanum lycopersicum
Solyc07g054580.2 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch07: 62858744-62868743 Solanum lycopersicum
Solyc07g054580.2 10.0kb downstream 10.0kb downstream 13844 true SL2.50ch07: 62844900-62858743 Solanum lycopersicum
Solyc07g054580.2 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch07: 62844900-62854899 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121368719 5263 Asterids Singleton cluster - no MSA
123750974 5271 Pentapetalae View MSA
122788178 5272 Eudicot View MSA
122044155 5273 Angiosperm View MSA
121349637 5274 Embryophyte View MSA
123381383 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain