Gene : Solyc07g042830.2 S. lycopersicum ITAG2.4
Defline:  (1 of 1) PTHR12526//PTHR12526:SF392 - GLYCOSYLTRANSFERASE // SUBFAMILY NOT NAMED Description:  Glycogen synthase (AHRD V1 ***- D1R4V0_9CHLA); contains Interpro domain(s) IPR011835 Glycogen/starch synthases, ADP-glucose type
Genomic Order:  1229 Name:  ? Solyc07g042830.2
Secondary Identifier:  ? PAC:36161324
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Slycopersicum GLYCOGENSYNTH-PWY Solanum lycopersicum pathologic  
Slycopersicum PWY-622 Solanum lycopersicum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc07g042830.2 0.5kb upstream 0.5kb upstream 19401 true SL2.50ch07: 56340049-56359449 Solanum lycopersicum
Solyc07g042830.2 0.5kb upstream 0.5kb upstream 500 false SL2.50ch07: 56358950-56359449 Solanum lycopersicum
Solyc07g042830.2 0.5kb downstream 0.5kb downstream 19401 true SL2.50ch07: 56339549-56358949 Solanum lycopersicum
Solyc07g042830.2 0.5kb downstream 0.5kb downstream 500 false SL2.50ch07: 56339549-56340048 Solanum lycopersicum
Solyc07g042830.2 1.0kb upstream 1.0kb upstream 19901 true SL2.50ch07: 56340049-56359949 Solanum lycopersicum
Solyc07g042830.2 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch07: 56358950-56359949 Solanum lycopersicum
Solyc07g042830.2 1.0kb downstream 1.0kb downstream 19901 true SL2.50ch07: 56339049-56358949 Solanum lycopersicum
Solyc07g042830.2 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch07: 56339049-56340048 Solanum lycopersicum
Solyc07g042830.2 2.0kb upstream 2.0kb upstream 20901 true SL2.50ch07: 56340049-56360949 Solanum lycopersicum
Solyc07g042830.2 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch07: 56358950-56360949 Solanum lycopersicum
Solyc07g042830.2 2.0kb downstream 2.0kb downstream 20901 true SL2.50ch07: 56338049-56358949 Solanum lycopersicum
Solyc07g042830.2 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch07: 56338049-56340048 Solanum lycopersicum
Solyc07g042830.2 5.0kb upstream 5.0kb upstream 23901 true SL2.50ch07: 56340049-56363949 Solanum lycopersicum
Solyc07g042830.2 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch07: 56358950-56363949 Solanum lycopersicum
Solyc07g042830.2 5.0kb downstream 5.0kb downstream 23901 true SL2.50ch07: 56335049-56358949 Solanum lycopersicum
Solyc07g042830.2 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch07: 56335049-56340048 Solanum lycopersicum
Solyc07g042830.2 10.0kb upstream 10.0kb upstream 28901 true SL2.50ch07: 56340049-56368949 Solanum lycopersicum
Solyc07g042830.2 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch07: 56358950-56368949 Solanum lycopersicum
Solyc07g042830.2 10.0kb downstream 10.0kb downstream 28901 true SL2.50ch07: 56330049-56358949 Solanum lycopersicum
Solyc07g042830.2 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch07: 56330049-56340048 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121469731 5263 Asterids View MSA
123751940 5271 Pentapetalae View MSA
122774263 5272 Eudicot View MSA
122049203 5273 Angiosperm View MSA
121349172 5274 Embryophyte View MSA
123428648 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain