Gene : Solyc07g042160.2 S. lycopersicum ITAG2.4
Defline:  (1 of 34) PF12708 - Pectate lyase superfamily protein (Pectate_lyase_3) Description:  Polygalacturonase (AHRD V1 **-- B6SZN5_MAIZE); contains Interpro domain(s) IPR012334 Pectin lyase fold
Genomic Order:  1165 Name:  ? Solyc07g042160.2
Secondary Identifier:  ? PAC:36161996
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc07g042160.2 0.5kb upstream 0.5kb upstream 13582 true SL2.50ch07: 55149909-55163490 Solanum lycopersicum
Solyc07g042160.2 0.5kb upstream 0.5kb upstream 500 false SL2.50ch07: 55149909-55150408 Solanum lycopersicum
Solyc07g042160.2 0.5kb downstream 0.5kb downstream 13582 true SL2.50ch07: 55150409-55163990 Solanum lycopersicum
Solyc07g042160.2 0.5kb downstream 0.5kb downstream 500 false SL2.50ch07: 55163491-55163990 Solanum lycopersicum
Solyc07g042160.2 1.0kb upstream 1.0kb upstream 14082 true SL2.50ch07: 55149409-55163490 Solanum lycopersicum
Solyc07g042160.2 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch07: 55149409-55150408 Solanum lycopersicum
Solyc07g042160.2 1.0kb downstream 1.0kb downstream 14082 true SL2.50ch07: 55150409-55164490 Solanum lycopersicum
Solyc07g042160.2 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch07: 55163491-55164490 Solanum lycopersicum
Solyc07g042160.2 2.0kb upstream 2.0kb upstream 15082 true SL2.50ch07: 55148409-55163490 Solanum lycopersicum
Solyc07g042160.2 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch07: 55148409-55150408 Solanum lycopersicum
Solyc07g042160.2 2.0kb downstream 2.0kb downstream 15082 true SL2.50ch07: 55150409-55165490 Solanum lycopersicum
Solyc07g042160.2 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch07: 55163491-55165490 Solanum lycopersicum
Solyc07g042160.2 5.0kb upstream 5.0kb upstream 18082 true SL2.50ch07: 55145409-55163490 Solanum lycopersicum
Solyc07g042160.2 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch07: 55145409-55150408 Solanum lycopersicum
Solyc07g042160.2 5.0kb downstream 5.0kb downstream 18082 true SL2.50ch07: 55150409-55168490 Solanum lycopersicum
Solyc07g042160.2 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch07: 55163491-55168490 Solanum lycopersicum
Solyc07g042160.2 10.0kb upstream 10.0kb upstream 23082 true SL2.50ch07: 55140409-55163490 Solanum lycopersicum
Solyc07g042160.2 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch07: 55140409-55150408 Solanum lycopersicum
Solyc07g042160.2 10.0kb downstream 10.0kb downstream 23082 true SL2.50ch07: 55150409-55173490 Solanum lycopersicum
Solyc07g042160.2 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch07: 55163491-55173490 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026431 5273 Angiosperm View MSA
121480196 5263 Asterids View MSA
123751274 5271 Pentapetalae View MSA
122794411 5272 Eudicot View MSA
121348629 5274 Embryophyte View MSA
123380947 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain