Gene : Solyc07g045340.2 S. lycopersicum ITAG2.4
Defline:  (1 of 10) PF05627 - Cleavage site for pathogenic type III effector avirulence factor Avr (AvrRpt-cleavage) Description:  RPM1 interacting protein 4 transcript 2 (AHRD V1 *-*- D2J0U4_9ASTR); contains Interpro domain(s) IPR008700 Defence response, Rin4
Genomic Order:  1377 Name:  ? Solyc07g045340.2
Secondary Identifier:  ? PAC:36161710
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc07g045340.2 0.5kb upstream 0.5kb upstream 4306 true SL2.50ch07: 58442295-58446600 Solanum lycopersicum
Solyc07g045340.2 0.5kb upstream 0.5kb upstream 500 false SL2.50ch07: 58446101-58446600 Solanum lycopersicum
Solyc07g045340.2 0.5kb downstream 0.5kb downstream 4306 true SL2.50ch07: 58441795-58446100 Solanum lycopersicum
Solyc07g045340.2 0.5kb downstream 0.5kb downstream 500 false SL2.50ch07: 58441795-58442294 Solanum lycopersicum
Solyc07g045340.2 1.0kb upstream 1.0kb upstream 4806 true SL2.50ch07: 58442295-58447100 Solanum lycopersicum
Solyc07g045340.2 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch07: 58446101-58447100 Solanum lycopersicum
Solyc07g045340.2 1.0kb downstream 1.0kb downstream 4806 true SL2.50ch07: 58441295-58446100 Solanum lycopersicum
Solyc07g045340.2 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch07: 58441295-58442294 Solanum lycopersicum
Solyc07g045340.2 2.0kb upstream 2.0kb upstream 5806 true SL2.50ch07: 58442295-58448100 Solanum lycopersicum
Solyc07g045340.2 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch07: 58446101-58448100 Solanum lycopersicum
Solyc07g045340.2 2.0kb downstream 2.0kb downstream 5806 true SL2.50ch07: 58440295-58446100 Solanum lycopersicum
Solyc07g045340.2 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch07: 58440295-58442294 Solanum lycopersicum
Solyc07g045340.2 5.0kb upstream 5.0kb upstream 8806 true SL2.50ch07: 58442295-58451100 Solanum lycopersicum
Solyc07g045340.2 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch07: 58446101-58451100 Solanum lycopersicum
Solyc07g045340.2 5.0kb downstream 5.0kb downstream 8806 true SL2.50ch07: 58437295-58446100 Solanum lycopersicum
Solyc07g045340.2 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch07: 58437295-58442294 Solanum lycopersicum
Solyc07g045340.2 10.0kb upstream 10.0kb upstream 13806 true SL2.50ch07: 58442295-58456100 Solanum lycopersicum
Solyc07g045340.2 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch07: 58446101-58456100 Solanum lycopersicum
Solyc07g045340.2 10.0kb downstream 10.0kb downstream 13806 true SL2.50ch07: 58432295-58446100 Solanum lycopersicum
Solyc07g045340.2 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch07: 58432295-58442294 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121479350 5263 Asterids View MSA
123751462 5271 Pentapetalae View MSA
122795351 5272 Eudicot View MSA
122048962 5273 Angiosperm View MSA
121311190 5274 Embryophyte View MSA
123348519 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain