Gene : Solyc03g051970.2 S. lycopersicum ITAG2.4
Defline:  (1 of 1) K04716 - sphingosine-1-phosphate phosphatase 1 (SGPP1) Description:  Sphingosine-1-phosphate phosphatase (AHRD V1 *-*- A8P551_COPC7); contains Interpro domain(s) IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase
Genomic Order:  924 Name:  ? Solyc03g051970.2
Secondary Identifier:  ? PAC:36134554
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Slycopersicum PWY-6453 Solanum lycopersicum pathologic  
Slycopersicum TRIGLSYN-PWY Solanum lycopersicum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc03g051970.2 0.5kb upstream 0.5kb upstream 4748 true SL2.50ch03: 21314668-21319415 Solanum lycopersicum
Solyc03g051970.2 0.5kb upstream 0.5kb upstream 500 false SL2.50ch03: 21318916-21319415 Solanum lycopersicum
Solyc03g051970.2 0.5kb downstream 0.5kb downstream 4748 true SL2.50ch03: 21314168-21318915 Solanum lycopersicum
Solyc03g051970.2 0.5kb downstream 0.5kb downstream 500 false SL2.50ch03: 21314168-21314667 Solanum lycopersicum
Solyc03g051970.2 1.0kb upstream 1.0kb upstream 5248 true SL2.50ch03: 21314668-21319915 Solanum lycopersicum
Solyc03g051970.2 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch03: 21318916-21319915 Solanum lycopersicum
Solyc03g051970.2 1.0kb downstream 1.0kb downstream 5248 true SL2.50ch03: 21313668-21318915 Solanum lycopersicum
Solyc03g051970.2 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch03: 21313668-21314667 Solanum lycopersicum
Solyc03g051970.2 2.0kb upstream 2.0kb upstream 6248 true SL2.50ch03: 21314668-21320915 Solanum lycopersicum
Solyc03g051970.2 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch03: 21318916-21320915 Solanum lycopersicum
Solyc03g051970.2 2.0kb downstream 2.0kb downstream 6248 true SL2.50ch03: 21312668-21318915 Solanum lycopersicum
Solyc03g051970.2 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch03: 21312668-21314667 Solanum lycopersicum
Solyc03g051970.2 5.0kb upstream 5.0kb upstream 9248 true SL2.50ch03: 21314668-21323915 Solanum lycopersicum
Solyc03g051970.2 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch03: 21318916-21323915 Solanum lycopersicum
Solyc03g051970.2 5.0kb downstream 5.0kb downstream 9248 true SL2.50ch03: 21309668-21318915 Solanum lycopersicum
Solyc03g051970.2 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch03: 21309668-21314667 Solanum lycopersicum
Solyc03g051970.2 10.0kb upstream 10.0kb upstream 14248 true SL2.50ch03: 21314668-21328915 Solanum lycopersicum
Solyc03g051970.2 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch03: 21318916-21328915 Solanum lycopersicum
Solyc03g051970.2 10.0kb downstream 10.0kb downstream 14248 true SL2.50ch03: 21304668-21318915 Solanum lycopersicum
Solyc03g051970.2 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch03: 21304668-21314667 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121472782 5263 Asterids View MSA
123739708 5271 Pentapetalae View MSA
122787223 5272 Eudicot View MSA
122041787 5273 Angiosperm View MSA
121351488 5274 Embryophyte View MSA
123382186 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain