Gene : Solyc03g025500.2 S. lycopersicum ITAG2.4
Defline:  (1 of 11) 1.14.11.2 - Procollagen-proline dioxygenase / Protocollagen hydroxylase Description:  Prolyl 4-hydroxylase alpha subunit-like protein (AHRD V1 ***- Q9LSI6_ARATH); contains Interpro domain(s) IPR006620 Prolyl 4-hydroxylase, alpha subunit
Genomic Order:  342 Name:  ? Solyc03g025500.2
Secondary Identifier:  ? PAC:36134993
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc03g025500.2 0.5kb upstream 0.5kb upstream 4016 true SL2.50ch03: 2893357-2897372 Solanum lycopersicum
Solyc03g025500.2 0.5kb upstream 0.5kb upstream 500 false SL2.50ch03: 2896873-2897372 Solanum lycopersicum
Solyc03g025500.2 0.5kb downstream 0.5kb downstream 4016 true SL2.50ch03: 2892857-2896872 Solanum lycopersicum
Solyc03g025500.2 0.5kb downstream 0.5kb downstream 500 false SL2.50ch03: 2892857-2893356 Solanum lycopersicum
Solyc03g025500.2 1.0kb upstream 1.0kb upstream 4516 true SL2.50ch03: 2893357-2897872 Solanum lycopersicum
Solyc03g025500.2 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch03: 2896873-2897872 Solanum lycopersicum
Solyc03g025500.2 1.0kb downstream 1.0kb downstream 4516 true SL2.50ch03: 2892357-2896872 Solanum lycopersicum
Solyc03g025500.2 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch03: 2892357-2893356 Solanum lycopersicum
Solyc03g025500.2 2.0kb upstream 2.0kb upstream 5516 true SL2.50ch03: 2893357-2898872 Solanum lycopersicum
Solyc03g025500.2 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch03: 2896873-2898872 Solanum lycopersicum
Solyc03g025500.2 2.0kb downstream 2.0kb downstream 5516 true SL2.50ch03: 2891357-2896872 Solanum lycopersicum
Solyc03g025500.2 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch03: 2891357-2893356 Solanum lycopersicum
Solyc03g025500.2 5.0kb upstream 5.0kb upstream 8516 true SL2.50ch03: 2893357-2901872 Solanum lycopersicum
Solyc03g025500.2 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch03: 2896873-2901872 Solanum lycopersicum
Solyc03g025500.2 5.0kb downstream 5.0kb downstream 8516 true SL2.50ch03: 2888357-2896872 Solanum lycopersicum
Solyc03g025500.2 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch03: 2888357-2893356 Solanum lycopersicum
Solyc03g025500.2 10.0kb upstream 10.0kb upstream 13516 true SL2.50ch03: 2893357-2906872 Solanum lycopersicum
Solyc03g025500.2 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch03: 2896873-2906872 Solanum lycopersicum
Solyc03g025500.2 10.0kb downstream 10.0kb downstream 13516 true SL2.50ch03: 2883357-2896872 Solanum lycopersicum
Solyc03g025500.2 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch03: 2883357-2893356 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121791816 5273 Angiosperm View MSA
121472630 5263 Asterids View MSA
123739634 5271 Pentapetalae View MSA
122794132 5272 Eudicot View MSA
121063105 5274 Embryophyte View MSA
123102888 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain