Gene : Solyc03g020000.2 S. lycopersicum ITAG2.4
Defline:  (1 of 174) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Description:  Pentatricopeptide repeat-containing protein (AHRD V1 *-*- D7L041_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat
Genomic Order:  2099 Name:  ? Solyc03g020000.2
Secondary Identifier:  ? PAC:36135991
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc03g020000.2 0.5kb upstream 0.5kb upstream 4366 true SL2.50ch03: 61224207-61228572 Solanum lycopersicum
Solyc03g020000.2 0.5kb upstream 0.5kb upstream 500 false SL2.50ch03: 61228073-61228572 Solanum lycopersicum
Solyc03g020000.2 0.5kb downstream 0.5kb downstream 4366 true SL2.50ch03: 61223707-61228072 Solanum lycopersicum
Solyc03g020000.2 0.5kb downstream 0.5kb downstream 500 false SL2.50ch03: 61223707-61224206 Solanum lycopersicum
Solyc03g020000.2 1.0kb upstream 1.0kb upstream 4866 true SL2.50ch03: 61224207-61229072 Solanum lycopersicum
Solyc03g020000.2 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch03: 61228073-61229072 Solanum lycopersicum
Solyc03g020000.2 1.0kb downstream 1.0kb downstream 4866 true SL2.50ch03: 61223207-61228072 Solanum lycopersicum
Solyc03g020000.2 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch03: 61223207-61224206 Solanum lycopersicum
Solyc03g020000.2 2.0kb upstream 2.0kb upstream 5866 true SL2.50ch03: 61224207-61230072 Solanum lycopersicum
Solyc03g020000.2 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch03: 61228073-61230072 Solanum lycopersicum
Solyc03g020000.2 2.0kb downstream 2.0kb downstream 5866 true SL2.50ch03: 61222207-61228072 Solanum lycopersicum
Solyc03g020000.2 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch03: 61222207-61224206 Solanum lycopersicum
Solyc03g020000.2 5.0kb upstream 5.0kb upstream 8866 true SL2.50ch03: 61224207-61233072 Solanum lycopersicum
Solyc03g020000.2 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch03: 61228073-61233072 Solanum lycopersicum
Solyc03g020000.2 5.0kb downstream 5.0kb downstream 8866 true SL2.50ch03: 61219207-61228072 Solanum lycopersicum
Solyc03g020000.2 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch03: 61219207-61224206 Solanum lycopersicum
Solyc03g020000.2 10.0kb upstream 10.0kb upstream 13866 true SL2.50ch03: 61224207-61238072 Solanum lycopersicum
Solyc03g020000.2 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch03: 61228073-61238072 Solanum lycopersicum
Solyc03g020000.2 10.0kb downstream 10.0kb downstream 13866 true SL2.50ch03: 61214207-61228072 Solanum lycopersicum
Solyc03g020000.2 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch03: 61214207-61224206 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029261 5273 Angiosperm View MSA
121366489 5263 Asterids Singleton cluster - no MSA
123650109 5271 Pentapetalae Singleton cluster - no MSA
122684041 5272 Eudicot Singleton cluster - no MSA
121298616 5274 Embryophyte View MSA
123336578 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain