Gene : Solyc03g098540.1 S. lycopersicum ITAG2.4
Defline:  (1 of 12) PF08284 - Retroviral aspartyl protease (RVP_2) Description:  Polyprotein (Fragment) (AHRD V1 *-*- B4YF15_ANACO)
Genomic Order:  2064 Name:  ? Solyc03g098540.1
Secondary Identifier:  ? PAC:36136996
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc03g098540.1 0.5kb upstream 0.5kb upstream 1625 true SL2.50ch03: 60845023-60846647 Solanum lycopersicum
Solyc03g098540.1 0.5kb upstream 0.5kb upstream 500 false SL2.50ch03: 60845023-60845522 Solanum lycopersicum
Solyc03g098540.1 0.5kb downstream 0.5kb downstream 1625 true SL2.50ch03: 60845523-60847147 Solanum lycopersicum
Solyc03g098540.1 0.5kb downstream 0.5kb downstream 500 false SL2.50ch03: 60846648-60847147 Solanum lycopersicum
Solyc03g098540.1 1.0kb upstream 1.0kb upstream 2125 true SL2.50ch03: 60844523-60846647 Solanum lycopersicum
Solyc03g098540.1 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch03: 60844523-60845522 Solanum lycopersicum
Solyc03g098540.1 1.0kb downstream 1.0kb downstream 2125 true SL2.50ch03: 60845523-60847647 Solanum lycopersicum
Solyc03g098540.1 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch03: 60846648-60847647 Solanum lycopersicum
Solyc03g098540.1 2.0kb upstream 2.0kb upstream 3125 true SL2.50ch03: 60843523-60846647 Solanum lycopersicum
Solyc03g098540.1 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch03: 60843523-60845522 Solanum lycopersicum
Solyc03g098540.1 2.0kb downstream 2.0kb downstream 3125 true SL2.50ch03: 60845523-60848647 Solanum lycopersicum
Solyc03g098540.1 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch03: 60846648-60848647 Solanum lycopersicum
Solyc03g098540.1 5.0kb upstream 5.0kb upstream 6125 true SL2.50ch03: 60840523-60846647 Solanum lycopersicum
Solyc03g098540.1 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch03: 60840523-60845522 Solanum lycopersicum
Solyc03g098540.1 5.0kb downstream 5.0kb downstream 6125 true SL2.50ch03: 60845523-60851647 Solanum lycopersicum
Solyc03g098540.1 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch03: 60846648-60851647 Solanum lycopersicum
Solyc03g098540.1 10.0kb upstream 10.0kb upstream 11125 true SL2.50ch03: 60835523-60846647 Solanum lycopersicum
Solyc03g098540.1 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch03: 60835523-60845522 Solanum lycopersicum
Solyc03g098540.1 10.0kb downstream 10.0kb downstream 11125 true SL2.50ch03: 60845523-60856647 Solanum lycopersicum
Solyc03g098540.1 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch03: 60846648-60856647 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121711160 5273 Angiosperm View MSA
121385858 5263 Asterids View MSA
123667587 5271 Pentapetalae View MSA
122701496 5272 Eudicot View MSA
120982920 5274 Embryophyte View MSA
123023158 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain