Gene : Solyc09g007820.1 S. lycopersicum ITAG2.4
Defline:  (1 of 18) PF00651//PF03000 - BTB/POZ domain (BTB) // NPH3 family (NPH3) Description:  Phototropic-responsive NPH3 family protein (AHRD V1 **-- D7KEU3_ARALY); contains Interpro domain(s) IPR004249 NPH3
Genomic Order:  183 Name:  ? Solyc09g007820.1
Secondary Identifier:  ? PAC:36132185
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc09g007820.1 0.5kb upstream 0.5kb upstream 3395 true SL2.50ch09: 1347739-1351133 Solanum lycopersicum
Solyc09g007820.1 0.5kb upstream 0.5kb upstream 500 false SL2.50ch09: 1347739-1348238 Solanum lycopersicum
Solyc09g007820.1 0.5kb downstream 0.5kb downstream 3395 true SL2.50ch09: 1348239-1351633 Solanum lycopersicum
Solyc09g007820.1 0.5kb downstream 0.5kb downstream 500 false SL2.50ch09: 1351134-1351633 Solanum lycopersicum
Solyc09g007820.1 1.0kb upstream 1.0kb upstream 3895 true SL2.50ch09: 1347239-1351133 Solanum lycopersicum
Solyc09g007820.1 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch09: 1347239-1348238 Solanum lycopersicum
Solyc09g007820.1 1.0kb downstream 1.0kb downstream 3895 true SL2.50ch09: 1348239-1352133 Solanum lycopersicum
Solyc09g007820.1 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch09: 1351134-1352133 Solanum lycopersicum
Solyc09g007820.1 2.0kb upstream 2.0kb upstream 4895 true SL2.50ch09: 1346239-1351133 Solanum lycopersicum
Solyc09g007820.1 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch09: 1346239-1348238 Solanum lycopersicum
Solyc09g007820.1 2.0kb downstream 2.0kb downstream 4895 true SL2.50ch09: 1348239-1353133 Solanum lycopersicum
Solyc09g007820.1 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch09: 1351134-1353133 Solanum lycopersicum
Solyc09g007820.1 5.0kb upstream 5.0kb upstream 7895 true SL2.50ch09: 1343239-1351133 Solanum lycopersicum
Solyc09g007820.1 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch09: 1343239-1348238 Solanum lycopersicum
Solyc09g007820.1 5.0kb downstream 5.0kb downstream 7895 true SL2.50ch09: 1348239-1356133 Solanum lycopersicum
Solyc09g007820.1 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch09: 1351134-1356133 Solanum lycopersicum
Solyc09g007820.1 10.0kb upstream 10.0kb upstream 12895 true SL2.50ch09: 1338239-1351133 Solanum lycopersicum
Solyc09g007820.1 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch09: 1338239-1348238 Solanum lycopersicum
Solyc09g007820.1 10.0kb downstream 10.0kb downstream 12895 true SL2.50ch09: 1348239-1361133 Solanum lycopersicum
Solyc09g007820.1 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch09: 1351134-1361133 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121472187 5263 Asterids View MSA
123743168 5271 Pentapetalae View MSA
122791271 5272 Eudicot View MSA
122050644 5273 Angiosperm View MSA
121312043 5274 Embryophyte View MSA
123349254 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain