Gene : Solyc03g116500.2 S. lycopersicum ITAG2.4
Defline:  (1 of 15) K01213 - galacturan 1,4-alpha-galacturonidase (E3.2.1.67) Description:  Polygalacturonase (AHRD V1 ***- Q9M7D3_SOLLC); contains Interpro domain(s) IPR000743 Glycoside hydrolase, family 28
Genomic Order:  2695 Name:  ? Solyc03g116500.2
Secondary Identifier:  ? PAC:36136644
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Slycopersicum PWY-1081 Solanum lycopersicum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc03g116500.2 0.5kb upstream 0.5kb upstream 4809 true SL2.50ch03: 65899961-65904769 Solanum lycopersicum
Solyc03g116500.2 0.5kb upstream 0.5kb upstream 500 false SL2.50ch03: 65899961-65900460 Solanum lycopersicum
Solyc03g116500.2 0.5kb downstream 0.5kb downstream 4809 true SL2.50ch03: 65900461-65905269 Solanum lycopersicum
Solyc03g116500.2 0.5kb downstream 0.5kb downstream 500 false SL2.50ch03: 65904770-65905269 Solanum lycopersicum
Solyc03g116500.2 1.0kb upstream 1.0kb upstream 5309 true SL2.50ch03: 65899461-65904769 Solanum lycopersicum
Solyc03g116500.2 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch03: 65899461-65900460 Solanum lycopersicum
Solyc03g116500.2 1.0kb downstream 1.0kb downstream 5309 true SL2.50ch03: 65900461-65905769 Solanum lycopersicum
Solyc03g116500.2 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch03: 65904770-65905769 Solanum lycopersicum
Solyc03g116500.2 2.0kb upstream 2.0kb upstream 6309 true SL2.50ch03: 65898461-65904769 Solanum lycopersicum
Solyc03g116500.2 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch03: 65898461-65900460 Solanum lycopersicum
Solyc03g116500.2 2.0kb downstream 2.0kb downstream 6309 true SL2.50ch03: 65900461-65906769 Solanum lycopersicum
Solyc03g116500.2 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch03: 65904770-65906769 Solanum lycopersicum
Solyc03g116500.2 5.0kb upstream 5.0kb upstream 9309 true SL2.50ch03: 65895461-65904769 Solanum lycopersicum
Solyc03g116500.2 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch03: 65895461-65900460 Solanum lycopersicum
Solyc03g116500.2 5.0kb downstream 5.0kb downstream 9309 true SL2.50ch03: 65900461-65909769 Solanum lycopersicum
Solyc03g116500.2 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch03: 65904770-65909769 Solanum lycopersicum
Solyc03g116500.2 10.0kb upstream 10.0kb upstream 14309 true SL2.50ch03: 65890461-65904769 Solanum lycopersicum
Solyc03g116500.2 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch03: 65890461-65900460 Solanum lycopersicum
Solyc03g116500.2 10.0kb downstream 10.0kb downstream 14309 true SL2.50ch03: 65900461-65914769 Solanum lycopersicum
Solyc03g116500.2 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch03: 65904770-65914769 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121472199 5263 Asterids View MSA
123747899 5271 Pentapetalae View MSA
122789338 5272 Eudicot View MSA
122047278 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain