Gene : Solyc03g116140.2 S. lycopersicum ITAG2.4
Defline:  (1 of 1) PTHR12963//PTHR12963:SF1 - THYROID RECEPTOR INTERACTING PROTEIN RELATED // SUBFAMILY NOT NAMED Description:  Activating signal cointegrator 1 (AHRD V1 **-- C3KH38_ANOFI); contains Interpro domain(s) IPR009349 Zinc finger, C2HC5-type
Genomic Order:  2659 Name:  ? Solyc03g116140.2
Secondary Identifier:  ? PAC:36133834
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc03g116140.2 0.5kb upstream 0.5kb upstream 4688 true SL2.50ch03: 65635064-65639751 Solanum lycopersicum
Solyc03g116140.2 0.5kb upstream 0.5kb upstream 500 false SL2.50ch03: 65635064-65635563 Solanum lycopersicum
Solyc03g116140.2 0.5kb downstream 0.5kb downstream 4688 true SL2.50ch03: 65635564-65640251 Solanum lycopersicum
Solyc03g116140.2 0.5kb downstream 0.5kb downstream 500 false SL2.50ch03: 65639752-65640251 Solanum lycopersicum
Solyc03g116140.2 1.0kb upstream 1.0kb upstream 5188 true SL2.50ch03: 65634564-65639751 Solanum lycopersicum
Solyc03g116140.2 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch03: 65634564-65635563 Solanum lycopersicum
Solyc03g116140.2 1.0kb downstream 1.0kb downstream 5188 true SL2.50ch03: 65635564-65640751 Solanum lycopersicum
Solyc03g116140.2 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch03: 65639752-65640751 Solanum lycopersicum
Solyc03g116140.2 2.0kb upstream 2.0kb upstream 6188 true SL2.50ch03: 65633564-65639751 Solanum lycopersicum
Solyc03g116140.2 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch03: 65633564-65635563 Solanum lycopersicum
Solyc03g116140.2 2.0kb downstream 2.0kb downstream 6188 true SL2.50ch03: 65635564-65641751 Solanum lycopersicum
Solyc03g116140.2 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch03: 65639752-65641751 Solanum lycopersicum
Solyc03g116140.2 5.0kb upstream 5.0kb upstream 9188 true SL2.50ch03: 65630564-65639751 Solanum lycopersicum
Solyc03g116140.2 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch03: 65630564-65635563 Solanum lycopersicum
Solyc03g116140.2 5.0kb downstream 5.0kb downstream 9188 true SL2.50ch03: 65635564-65644751 Solanum lycopersicum
Solyc03g116140.2 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch03: 65639752-65644751 Solanum lycopersicum
Solyc03g116140.2 10.0kb upstream 10.0kb upstream 14188 true SL2.50ch03: 65625564-65639751 Solanum lycopersicum
Solyc03g116140.2 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch03: 65625564-65635563 Solanum lycopersicum
Solyc03g116140.2 10.0kb downstream 10.0kb downstream 14188 true SL2.50ch03: 65635564-65649751 Solanum lycopersicum
Solyc03g116140.2 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch03: 65639752-65649751 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121470209 5263 Asterids View MSA
123738411 5271 Pentapetalae View MSA
122786940 5272 Eudicot View MSA
122044191 5273 Angiosperm View MSA
121310249 5274 Embryophyte View MSA
123424634 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain