Gene : Solyc09g055950.1 S. lycopersicum ITAG2.4
Defline:  (1 of 2) K02706 - photosystem II P680 reaction center D2 protein (psbD) Description:  Photosystem II D2 protein (AHRD V1 ***- D3WE71_9MAGN); contains Interpro domain(s) IPR000484 Photosynthetic reaction centre, L/M
Genomic Order:  1148 Name:  ? Solyc09g055950.1
Secondary Identifier:  ? PAC:36131629
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Slycopersicum PHOTOALL-PWY Solanum lycopersicum pathologic  
Slycopersicum PWY-101 Solanum lycopersicum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc09g055950.1 0.5kb upstream 0.5kb upstream 1003 true SL2.50ch09: 46262235-46263237 Solanum lycopersicum
Solyc09g055950.1 0.5kb upstream 0.5kb upstream 500 false SL2.50ch09: 46262235-46262734 Solanum lycopersicum
Solyc09g055950.1 0.5kb downstream 0.5kb downstream 1003 true SL2.50ch09: 46262735-46263737 Solanum lycopersicum
Solyc09g055950.1 0.5kb downstream 0.5kb downstream 500 false SL2.50ch09: 46263238-46263737 Solanum lycopersicum
Solyc09g055950.1 1.0kb upstream 1.0kb upstream 1503 true SL2.50ch09: 46261735-46263237 Solanum lycopersicum
Solyc09g055950.1 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch09: 46261735-46262734 Solanum lycopersicum
Solyc09g055950.1 1.0kb downstream 1.0kb downstream 1503 true SL2.50ch09: 46262735-46264237 Solanum lycopersicum
Solyc09g055950.1 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch09: 46263238-46264237 Solanum lycopersicum
Solyc09g055950.1 2.0kb upstream 2.0kb upstream 2503 true SL2.50ch09: 46260735-46263237 Solanum lycopersicum
Solyc09g055950.1 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch09: 46260735-46262734 Solanum lycopersicum
Solyc09g055950.1 2.0kb downstream 2.0kb downstream 2503 true SL2.50ch09: 46262735-46265237 Solanum lycopersicum
Solyc09g055950.1 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch09: 46263238-46265237 Solanum lycopersicum
Solyc09g055950.1 5.0kb upstream 5.0kb upstream 5503 true SL2.50ch09: 46257735-46263237 Solanum lycopersicum
Solyc09g055950.1 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch09: 46257735-46262734 Solanum lycopersicum
Solyc09g055950.1 5.0kb downstream 5.0kb downstream 5503 true SL2.50ch09: 46262735-46268237 Solanum lycopersicum
Solyc09g055950.1 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch09: 46263238-46268237 Solanum lycopersicum
Solyc09g055950.1 10.0kb upstream 10.0kb upstream 10503 true SL2.50ch09: 46252735-46263237 Solanum lycopersicum
Solyc09g055950.1 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch09: 46252735-46262734 Solanum lycopersicum
Solyc09g055950.1 10.0kb downstream 10.0kb downstream 10503 true SL2.50ch09: 46262735-46273237 Solanum lycopersicum
Solyc09g055950.1 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch09: 46263238-46273237 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121481009 5263 Asterids View MSA
123753555 5271 Pentapetalae View MSA
122797414 5272 Eudicot View MSA
122047558 5273 Angiosperm View MSA
121350331 5274 Embryophyte View MSA
123381681 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain