Gene : Solyc09g042290.1 S. lycopersicum ITAG2.4
Defline:  (1 of 174) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Description:  Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MRC5_ARALY); contains Interpro domain(s) IPR002625 Smr protein/MutS2 C-terminal
Genomic Order:  932 Name:  ? Solyc09g042290.1
Secondary Identifier:  ? PAC:36131509
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc09g042290.1 0.5kb upstream 0.5kb upstream 1727 true SL2.50ch09: 22908128-22909854 Solanum lycopersicum
Solyc09g042290.1 0.5kb upstream 0.5kb upstream 500 false SL2.50ch09: 22909355-22909854 Solanum lycopersicum
Solyc09g042290.1 0.5kb downstream 0.5kb downstream 1727 true SL2.50ch09: 22907628-22909354 Solanum lycopersicum
Solyc09g042290.1 0.5kb downstream 0.5kb downstream 500 false SL2.50ch09: 22907628-22908127 Solanum lycopersicum
Solyc09g042290.1 1.0kb upstream 1.0kb upstream 2227 true SL2.50ch09: 22908128-22910354 Solanum lycopersicum
Solyc09g042290.1 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch09: 22909355-22910354 Solanum lycopersicum
Solyc09g042290.1 1.0kb downstream 1.0kb downstream 2227 true SL2.50ch09: 22907128-22909354 Solanum lycopersicum
Solyc09g042290.1 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch09: 22907128-22908127 Solanum lycopersicum
Solyc09g042290.1 2.0kb upstream 2.0kb upstream 3227 true SL2.50ch09: 22908128-22911354 Solanum lycopersicum
Solyc09g042290.1 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch09: 22909355-22911354 Solanum lycopersicum
Solyc09g042290.1 2.0kb downstream 2.0kb downstream 3227 true SL2.50ch09: 22906128-22909354 Solanum lycopersicum
Solyc09g042290.1 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch09: 22906128-22908127 Solanum lycopersicum
Solyc09g042290.1 5.0kb upstream 5.0kb upstream 6227 true SL2.50ch09: 22908128-22914354 Solanum lycopersicum
Solyc09g042290.1 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch09: 22909355-22914354 Solanum lycopersicum
Solyc09g042290.1 5.0kb downstream 5.0kb downstream 6227 true SL2.50ch09: 22903128-22909354 Solanum lycopersicum
Solyc09g042290.1 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch09: 22903128-22908127 Solanum lycopersicum
Solyc09g042290.1 10.0kb upstream 10.0kb upstream 11227 true SL2.50ch09: 22908128-22919354 Solanum lycopersicum
Solyc09g042290.1 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch09: 22909355-22919354 Solanum lycopersicum
Solyc09g042290.1 10.0kb downstream 10.0kb downstream 11227 true SL2.50ch09: 22898128-22909354 Solanum lycopersicum
Solyc09g042290.1 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch09: 22898128-22908127 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029535 5273 Angiosperm View MSA
121480926 5263 Asterids View MSA
123752505 5271 Pentapetalae View MSA
122774601 5272 Eudicot View MSA
121298852 5274 Embryophyte View MSA
123336794 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain