Gene : Solyc09g059130.1 S. lycopersicum ITAG2.4
Defline:  (1 of 6) PTHR22763:SF78 - E3 UBIQUITIN-PROTEIN LIGASE RHA2A Description:  E3 ubiquitin-protein ligase CG7694 (AHRD V1 *--- RN181_DROME); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type
Genomic Order:  1259 Name:  ? Solyc09g059130.1
Secondary Identifier:  ? PAC:36132007
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Slycopersicum PWY-7511 Solanum lycopersicum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc09g059130.1 0.5kb upstream 0.5kb upstream 941 true SL2.50ch09: 53424893-53425833 Solanum lycopersicum
Solyc09g059130.1 0.5kb upstream 0.5kb upstream 500 false SL2.50ch09: 53424893-53425392 Solanum lycopersicum
Solyc09g059130.1 0.5kb downstream 0.5kb downstream 941 true SL2.50ch09: 53425393-53426333 Solanum lycopersicum
Solyc09g059130.1 0.5kb downstream 0.5kb downstream 500 false SL2.50ch09: 53425834-53426333 Solanum lycopersicum
Solyc09g059130.1 1.0kb upstream 1.0kb upstream 1441 true SL2.50ch09: 53424393-53425833 Solanum lycopersicum
Solyc09g059130.1 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch09: 53424393-53425392 Solanum lycopersicum
Solyc09g059130.1 1.0kb downstream 1.0kb downstream 1441 true SL2.50ch09: 53425393-53426833 Solanum lycopersicum
Solyc09g059130.1 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch09: 53425834-53426833 Solanum lycopersicum
Solyc09g059130.1 2.0kb upstream 2.0kb upstream 2441 true SL2.50ch09: 53423393-53425833 Solanum lycopersicum
Solyc09g059130.1 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch09: 53423393-53425392 Solanum lycopersicum
Solyc09g059130.1 2.0kb downstream 2.0kb downstream 2441 true SL2.50ch09: 53425393-53427833 Solanum lycopersicum
Solyc09g059130.1 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch09: 53425834-53427833 Solanum lycopersicum
Solyc09g059130.1 5.0kb upstream 5.0kb upstream 5441 true SL2.50ch09: 53420393-53425833 Solanum lycopersicum
Solyc09g059130.1 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch09: 53420393-53425392 Solanum lycopersicum
Solyc09g059130.1 5.0kb downstream 5.0kb downstream 5441 true SL2.50ch09: 53425393-53430833 Solanum lycopersicum
Solyc09g059130.1 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch09: 53425834-53430833 Solanum lycopersicum
Solyc09g059130.1 10.0kb upstream 10.0kb upstream 10441 true SL2.50ch09: 53415393-53425833 Solanum lycopersicum
Solyc09g059130.1 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch09: 53415393-53425392 Solanum lycopersicum
Solyc09g059130.1 10.0kb downstream 10.0kb downstream 10441 true SL2.50ch09: 53425393-53435833 Solanum lycopersicum
Solyc09g059130.1 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch09: 53425834-53435833 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121390017 5263 Asterids View MSA
123753333 5271 Pentapetalae View MSA
122775058 5272 Eudicot View MSA
122051603 5273 Angiosperm View MSA
123429130 5275 Viridiplantae View MSA
121351603 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain