Gene : Solyc09g090900.2 S. lycopersicum ITAG2.4
Defline:  (1 of 2) K01703 - 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit (leuC) Description:  3-isopropylmalate dehydratase large subunit 2 (AHRD V1 **** B6U6T6_MAIZE); contains Interpro domain(s) IPR006251 Homoaconitase/3-isopropylmalate dehydratase, large subunit, subgroup
Genomic Order:  2232 Name:  ? Solyc09g090900.2
Secondary Identifier:  ? PAC:36132892
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Slycopersicum BRANCHED-CHAIN-AA-SYN-PWY Solanum lycopersicum pathologic  
Slycopersicum LEUSYN-PWY Solanum lycopersicum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc09g090900.2 0.5kb upstream 0.5kb upstream 5282 true SL2.50ch09: 70307764-70313045 Solanum lycopersicum
Solyc09g090900.2 0.5kb upstream 0.5kb upstream 500 false SL2.50ch09: 70307764-70308263 Solanum lycopersicum
Solyc09g090900.2 0.5kb downstream 0.5kb downstream 5282 true SL2.50ch09: 70308264-70313545 Solanum lycopersicum
Solyc09g090900.2 0.5kb downstream 0.5kb downstream 500 false SL2.50ch09: 70313046-70313545 Solanum lycopersicum
Solyc09g090900.2 1.0kb upstream 1.0kb upstream 5782 true SL2.50ch09: 70307264-70313045 Solanum lycopersicum
Solyc09g090900.2 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch09: 70307264-70308263 Solanum lycopersicum
Solyc09g090900.2 1.0kb downstream 1.0kb downstream 5782 true SL2.50ch09: 70308264-70314045 Solanum lycopersicum
Solyc09g090900.2 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch09: 70313046-70314045 Solanum lycopersicum
Solyc09g090900.2 2.0kb upstream 2.0kb upstream 6782 true SL2.50ch09: 70306264-70313045 Solanum lycopersicum
Solyc09g090900.2 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch09: 70306264-70308263 Solanum lycopersicum
Solyc09g090900.2 2.0kb downstream 2.0kb downstream 6782 true SL2.50ch09: 70308264-70315045 Solanum lycopersicum
Solyc09g090900.2 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch09: 70313046-70315045 Solanum lycopersicum
Solyc09g090900.2 5.0kb upstream 5.0kb upstream 9782 true SL2.50ch09: 70303264-70313045 Solanum lycopersicum
Solyc09g090900.2 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch09: 70303264-70308263 Solanum lycopersicum
Solyc09g090900.2 5.0kb downstream 5.0kb downstream 9782 true SL2.50ch09: 70308264-70318045 Solanum lycopersicum
Solyc09g090900.2 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch09: 70313046-70318045 Solanum lycopersicum
Solyc09g090900.2 10.0kb upstream 10.0kb upstream 14782 true SL2.50ch09: 70298264-70313045 Solanum lycopersicum
Solyc09g090900.2 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch09: 70298264-70308263 Solanum lycopersicum
Solyc09g090900.2 10.0kb downstream 10.0kb downstream 14782 true SL2.50ch09: 70308264-70323045 Solanum lycopersicum
Solyc09g090900.2 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch09: 70313046-70323045 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122030041 5273 Angiosperm View MSA
121370252 5263 Asterids Singleton cluster - no MSA
123653151 5271 Pentapetalae Singleton cluster - no MSA
122687075 5272 Eudicot Singleton cluster - no MSA
121348898 5274 Embryophyte View MSA
123428745 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain