Gene : Solyc09g092440.1 S. lycopersicum ITAG2.4
Defline:  (1 of 10) PF01535//PF13041//PF13812//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) // DYW family of nucleic acid deaminases (DYW_deaminase) Description:  Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LCN4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat
Genomic Order:  2386 Name:  ? Solyc09g092440.1
Secondary Identifier:  ? PAC:36132425
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc09g092440.1 0.5kb upstream 0.5kb upstream 2333 true SL2.50ch09: 71532371-71534703 Solanum lycopersicum
Solyc09g092440.1 0.5kb upstream 0.5kb upstream 500 false SL2.50ch09: 71532371-71532870 Solanum lycopersicum
Solyc09g092440.1 0.5kb downstream 0.5kb downstream 2333 true SL2.50ch09: 71532871-71535203 Solanum lycopersicum
Solyc09g092440.1 0.5kb downstream 0.5kb downstream 500 false SL2.50ch09: 71534704-71535203 Solanum lycopersicum
Solyc09g092440.1 1.0kb upstream 1.0kb upstream 2833 true SL2.50ch09: 71531871-71534703 Solanum lycopersicum
Solyc09g092440.1 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch09: 71531871-71532870 Solanum lycopersicum
Solyc09g092440.1 1.0kb downstream 1.0kb downstream 2833 true SL2.50ch09: 71532871-71535703 Solanum lycopersicum
Solyc09g092440.1 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch09: 71534704-71535703 Solanum lycopersicum
Solyc09g092440.1 2.0kb upstream 2.0kb upstream 3833 true SL2.50ch09: 71530871-71534703 Solanum lycopersicum
Solyc09g092440.1 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch09: 71530871-71532870 Solanum lycopersicum
Solyc09g092440.1 2.0kb downstream 2.0kb downstream 3833 true SL2.50ch09: 71532871-71536703 Solanum lycopersicum
Solyc09g092440.1 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch09: 71534704-71536703 Solanum lycopersicum
Solyc09g092440.1 5.0kb upstream 5.0kb upstream 6833 true SL2.50ch09: 71527871-71534703 Solanum lycopersicum
Solyc09g092440.1 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch09: 71527871-71532870 Solanum lycopersicum
Solyc09g092440.1 5.0kb downstream 5.0kb downstream 6833 true SL2.50ch09: 71532871-71539703 Solanum lycopersicum
Solyc09g092440.1 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch09: 71534704-71539703 Solanum lycopersicum
Solyc09g092440.1 10.0kb upstream 10.0kb upstream 11833 true SL2.50ch09: 71522871-71534703 Solanum lycopersicum
Solyc09g092440.1 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch09: 71522871-71532870 Solanum lycopersicum
Solyc09g092440.1 10.0kb downstream 10.0kb downstream 11833 true SL2.50ch09: 71532871-71544703 Solanum lycopersicum
Solyc09g092440.1 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch09: 71534704-71544703 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026319 5273 Angiosperm View MSA
121469798 5263 Asterids View MSA
123738212 5271 Pentapetalae View MSA
122786215 5272 Eudicot View MSA
121296277 5274 Embryophyte View MSA
123334471 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain