Gene : Solyc05g006560.1 S. lycopersicum ITAG2.4
Defline:  (1 of 6) PF13704 - Glycosyl transferase family 2 (Glyco_tranf_2_4) Description:  Ring zinc finger protein (Fragment) (AHRD V1 *--- A6MH00_LILLO); contains Interpro domain(s) IPR008166 Protein of unknown function DUF23
Genomic Order:  156 Name:  ? Solyc05g006560.1
Secondary Identifier:  ? PAC:36146500
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc05g006560.1 0.5kb upstream 0.5kb upstream 2303 true SL2.50ch05: 1194751-1197053 Solanum lycopersicum
Solyc05g006560.1 0.5kb upstream 0.5kb upstream 500 false SL2.50ch05: 1194751-1195250 Solanum lycopersicum
Solyc05g006560.1 0.5kb downstream 0.5kb downstream 2303 true SL2.50ch05: 1195251-1197553 Solanum lycopersicum
Solyc05g006560.1 0.5kb downstream 0.5kb downstream 500 false SL2.50ch05: 1197054-1197553 Solanum lycopersicum
Solyc05g006560.1 1.0kb upstream 1.0kb upstream 2803 true SL2.50ch05: 1194251-1197053 Solanum lycopersicum
Solyc05g006560.1 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch05: 1194251-1195250 Solanum lycopersicum
Solyc05g006560.1 1.0kb downstream 1.0kb downstream 2803 true SL2.50ch05: 1195251-1198053 Solanum lycopersicum
Solyc05g006560.1 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch05: 1197054-1198053 Solanum lycopersicum
Solyc05g006560.1 2.0kb upstream 2.0kb upstream 3803 true SL2.50ch05: 1193251-1197053 Solanum lycopersicum
Solyc05g006560.1 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch05: 1193251-1195250 Solanum lycopersicum
Solyc05g006560.1 2.0kb downstream 2.0kb downstream 3803 true SL2.50ch05: 1195251-1199053 Solanum lycopersicum
Solyc05g006560.1 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch05: 1197054-1199053 Solanum lycopersicum
Solyc05g006560.1 5.0kb upstream 5.0kb upstream 6803 true SL2.50ch05: 1190251-1197053 Solanum lycopersicum
Solyc05g006560.1 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch05: 1190251-1195250 Solanum lycopersicum
Solyc05g006560.1 5.0kb downstream 5.0kb downstream 6803 true SL2.50ch05: 1195251-1202053 Solanum lycopersicum
Solyc05g006560.1 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch05: 1197054-1202053 Solanum lycopersicum
Solyc05g006560.1 10.0kb upstream 10.0kb upstream 11803 true SL2.50ch05: 1185251-1197053 Solanum lycopersicum
Solyc05g006560.1 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch05: 1185251-1195250 Solanum lycopersicum
Solyc05g006560.1 10.0kb downstream 10.0kb downstream 11803 true SL2.50ch05: 1195251-1207053 Solanum lycopersicum
Solyc05g006560.1 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch05: 1197054-1207053 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121478897 5263 Asterids View MSA
123741891 5271 Pentapetalae View MSA
122797003 5272 Eudicot View MSA
122047525 5273 Angiosperm View MSA
123428981 5275 Viridiplantae View MSA
121349408 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain