Gene : Solyc05g006520.2 S. lycopersicum ITAG2.4
Defline:  (1 of 2) PTHR11516//PTHR11516:SF38 - PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT BACTERIAL AND ORGANELLAR // SUBFAMILY NOT NAMED Description:  Pyruvate dehydrogenase E1 component alpha subunit (AHRD V1 ***- B6TMS5_MAIZE); contains Interpro domain(s) IPR017597 Pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit, subgroup y
Genomic Order:  152 Name:  ? Solyc05g006520.2
Secondary Identifier:  ? PAC:36145987
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Slycopersicum PWY-5173 Solanum lycopersicum pathologic  
Slycopersicum PWY-5464 Solanum lycopersicum pathologic  
Slycopersicum PYRUVDEHYD-PWY Solanum lycopersicum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc05g006520.2 0.5kb upstream 0.5kb upstream 7195 true SL2.50ch05: 1134244-1141438 Solanum lycopersicum
Solyc05g006520.2 0.5kb upstream 0.5kb upstream 500 false SL2.50ch05: 1140939-1141438 Solanum lycopersicum
Solyc05g006520.2 0.5kb downstream 0.5kb downstream 7195 true SL2.50ch05: 1133744-1140938 Solanum lycopersicum
Solyc05g006520.2 0.5kb downstream 0.5kb downstream 500 false SL2.50ch05: 1133744-1134243 Solanum lycopersicum
Solyc05g006520.2 1.0kb upstream 1.0kb upstream 7695 true SL2.50ch05: 1134244-1141938 Solanum lycopersicum
Solyc05g006520.2 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch05: 1140939-1141938 Solanum lycopersicum
Solyc05g006520.2 1.0kb downstream 1.0kb downstream 7695 true SL2.50ch05: 1133244-1140938 Solanum lycopersicum
Solyc05g006520.2 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch05: 1133244-1134243 Solanum lycopersicum
Solyc05g006520.2 2.0kb upstream 2.0kb upstream 8695 true SL2.50ch05: 1134244-1142938 Solanum lycopersicum
Solyc05g006520.2 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch05: 1140939-1142938 Solanum lycopersicum
Solyc05g006520.2 2.0kb downstream 2.0kb downstream 8695 true SL2.50ch05: 1132244-1140938 Solanum lycopersicum
Solyc05g006520.2 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch05: 1132244-1134243 Solanum lycopersicum
Solyc05g006520.2 5.0kb upstream 5.0kb upstream 11695 true SL2.50ch05: 1134244-1145938 Solanum lycopersicum
Solyc05g006520.2 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch05: 1140939-1145938 Solanum lycopersicum
Solyc05g006520.2 5.0kb downstream 5.0kb downstream 11695 true SL2.50ch05: 1129244-1140938 Solanum lycopersicum
Solyc05g006520.2 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch05: 1129244-1134243 Solanum lycopersicum
Solyc05g006520.2 10.0kb upstream 10.0kb upstream 16695 true SL2.50ch05: 1134244-1150938 Solanum lycopersicum
Solyc05g006520.2 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch05: 1140939-1150938 Solanum lycopersicum
Solyc05g006520.2 10.0kb downstream 10.0kb downstream 16695 true SL2.50ch05: 1124244-1140938 Solanum lycopersicum
Solyc05g006520.2 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch05: 1124244-1134243 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121472151 5263 Asterids View MSA
123744027 5271 Pentapetalae View MSA
122788942 5272 Eudicot View MSA
122045712 5273 Angiosperm View MSA
121344698 5274 Embryophyte View MSA
123425832 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain