Gene : Solyc05g009190.2 S. lycopersicum ITAG2.4
Defline:  (1 of 2) 6.1.1.16 - Cysteine--tRNA ligase / Cysteinyl-tRNA synthetase Description:  Cysteinyl tRNA synthetase (AHRD V1 **** D0FY60_BETVU); contains Interpro domain(s) IPR002308 Cysteinyl-tRNA synthetase, class Ia
Genomic Order:  418 Name:  ? Solyc05g009190.2
Secondary Identifier:  ? PAC:36144521
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Slycopersicum TRNA-CHARGING-PWY Solanum lycopersicum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc05g009190.2 0.5kb upstream 0.5kb upstream 5546 true SL2.50ch05: 3328877-3334422 Solanum lycopersicum
Solyc05g009190.2 0.5kb upstream 0.5kb upstream 500 false SL2.50ch05: 3333923-3334422 Solanum lycopersicum
Solyc05g009190.2 0.5kb downstream 0.5kb downstream 5546 true SL2.50ch05: 3328377-3333922 Solanum lycopersicum
Solyc05g009190.2 0.5kb downstream 0.5kb downstream 500 false SL2.50ch05: 3328377-3328876 Solanum lycopersicum
Solyc05g009190.2 1.0kb upstream 1.0kb upstream 6046 true SL2.50ch05: 3328877-3334922 Solanum lycopersicum
Solyc05g009190.2 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch05: 3333923-3334922 Solanum lycopersicum
Solyc05g009190.2 1.0kb downstream 1.0kb downstream 6046 true SL2.50ch05: 3327877-3333922 Solanum lycopersicum
Solyc05g009190.2 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch05: 3327877-3328876 Solanum lycopersicum
Solyc05g009190.2 2.0kb upstream 2.0kb upstream 7046 true SL2.50ch05: 3328877-3335922 Solanum lycopersicum
Solyc05g009190.2 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch05: 3333923-3335922 Solanum lycopersicum
Solyc05g009190.2 2.0kb downstream 2.0kb downstream 7046 true SL2.50ch05: 3326877-3333922 Solanum lycopersicum
Solyc05g009190.2 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch05: 3326877-3328876 Solanum lycopersicum
Solyc05g009190.2 5.0kb upstream 5.0kb upstream 10046 true SL2.50ch05: 3328877-3338922 Solanum lycopersicum
Solyc05g009190.2 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch05: 3333923-3338922 Solanum lycopersicum
Solyc05g009190.2 5.0kb downstream 5.0kb downstream 10046 true SL2.50ch05: 3323877-3333922 Solanum lycopersicum
Solyc05g009190.2 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch05: 3323877-3328876 Solanum lycopersicum
Solyc05g009190.2 10.0kb upstream 10.0kb upstream 15046 true SL2.50ch05: 3328877-3343922 Solanum lycopersicum
Solyc05g009190.2 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch05: 3333923-3343922 Solanum lycopersicum
Solyc05g009190.2 10.0kb downstream 10.0kb downstream 15046 true SL2.50ch05: 3318877-3333922 Solanum lycopersicum
Solyc05g009190.2 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch05: 3318877-3328876 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121479250 5263 Asterids View MSA
123736819 5271 Pentapetalae View MSA
122791424 5272 Eudicot View MSA
122050932 5273 Angiosperm View MSA
121350340 5274 Embryophyte View MSA
123427761 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain