Gene : Solyc05g012540.2 S. lycopersicum ITAG2.4
Defline:  (1 of 1) PTHR14363//PTHR14363:SF13 - HEPARANASE-RELATED // SUBFAMILY NOT NAMED Description:  Heparanase (AHRD V1 ***- C5IFK6_ORYSI); contains Interpro domain(s) IPR005199 Glycoside hydrolase family 79, N-terminal
Genomic Order:  653 Name:  ? Solyc05g012540.2
Secondary Identifier:  ? PAC:36146313
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Slycopersicum PWY-7213 Solanum lycopersicum pathologic  
Slycopersicum PWY-7214 Solanum lycopersicum pathologic  
Slycopersicum PWY-7445 Solanum lycopersicum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc05g012540.2 0.5kb upstream 0.5kb upstream 3381 true SL2.50ch05: 5780970-5784350 Solanum lycopersicum
Solyc05g012540.2 0.5kb upstream 0.5kb upstream 500 false SL2.50ch05: 5780970-5781469 Solanum lycopersicum
Solyc05g012540.2 0.5kb downstream 0.5kb downstream 3381 true SL2.50ch05: 5781470-5784850 Solanum lycopersicum
Solyc05g012540.2 0.5kb downstream 0.5kb downstream 500 false SL2.50ch05: 5784351-5784850 Solanum lycopersicum
Solyc05g012540.2 1.0kb upstream 1.0kb upstream 3881 true SL2.50ch05: 5780470-5784350 Solanum lycopersicum
Solyc05g012540.2 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch05: 5780470-5781469 Solanum lycopersicum
Solyc05g012540.2 1.0kb downstream 1.0kb downstream 3881 true SL2.50ch05: 5781470-5785350 Solanum lycopersicum
Solyc05g012540.2 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch05: 5784351-5785350 Solanum lycopersicum
Solyc05g012540.2 2.0kb upstream 2.0kb upstream 4881 true SL2.50ch05: 5779470-5784350 Solanum lycopersicum
Solyc05g012540.2 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch05: 5779470-5781469 Solanum lycopersicum
Solyc05g012540.2 2.0kb downstream 2.0kb downstream 4881 true SL2.50ch05: 5781470-5786350 Solanum lycopersicum
Solyc05g012540.2 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch05: 5784351-5786350 Solanum lycopersicum
Solyc05g012540.2 5.0kb upstream 5.0kb upstream 7881 true SL2.50ch05: 5776470-5784350 Solanum lycopersicum
Solyc05g012540.2 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch05: 5776470-5781469 Solanum lycopersicum
Solyc05g012540.2 5.0kb downstream 5.0kb downstream 7881 true SL2.50ch05: 5781470-5789350 Solanum lycopersicum
Solyc05g012540.2 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch05: 5784351-5789350 Solanum lycopersicum
Solyc05g012540.2 10.0kb upstream 10.0kb upstream 12881 true SL2.50ch05: 5771470-5784350 Solanum lycopersicum
Solyc05g012540.2 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch05: 5771470-5781469 Solanum lycopersicum
Solyc05g012540.2 10.0kb downstream 10.0kb downstream 12881 true SL2.50ch05: 5781470-5794350 Solanum lycopersicum
Solyc05g012540.2 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch05: 5784351-5794350 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121414060 5263 Asterids View MSA
123745187 5271 Pentapetalae View MSA
122795641 5272 Eudicot View MSA
122049598 5273 Angiosperm View MSA
121348264 5274 Embryophyte View MSA
123380798 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain