Gene : Solyc05g012190.2 S. lycopersicum ITAG2.4
Defline:  (1 of 1) PTHR23077:SF54 - CELL DIVISION CONTROL PROTEIN 48 HOMOLOG B Description:  AAA family ATPase CDC48 subfamily (AHRD V1 **-- A8AAC3_IGNH4); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core
Genomic Order:  619 Name:  ? Solyc05g012190.2
Secondary Identifier:  ? PAC:36145585
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc05g012190.2 0.5kb upstream 0.5kb upstream 5944 true SL2.50ch05: 5456884-5462827 Solanum lycopersicum
Solyc05g012190.2 0.5kb upstream 0.5kb upstream 500 false SL2.50ch05: 5462328-5462827 Solanum lycopersicum
Solyc05g012190.2 0.5kb downstream 0.5kb downstream 5944 true SL2.50ch05: 5456384-5462327 Solanum lycopersicum
Solyc05g012190.2 0.5kb downstream 0.5kb downstream 500 false SL2.50ch05: 5456384-5456883 Solanum lycopersicum
Solyc05g012190.2 1.0kb upstream 1.0kb upstream 6444 true SL2.50ch05: 5456884-5463327 Solanum lycopersicum
Solyc05g012190.2 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch05: 5462328-5463327 Solanum lycopersicum
Solyc05g012190.2 1.0kb downstream 1.0kb downstream 6444 true SL2.50ch05: 5455884-5462327 Solanum lycopersicum
Solyc05g012190.2 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch05: 5455884-5456883 Solanum lycopersicum
Solyc05g012190.2 2.0kb upstream 2.0kb upstream 7444 true SL2.50ch05: 5456884-5464327 Solanum lycopersicum
Solyc05g012190.2 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch05: 5462328-5464327 Solanum lycopersicum
Solyc05g012190.2 2.0kb downstream 2.0kb downstream 7444 true SL2.50ch05: 5454884-5462327 Solanum lycopersicum
Solyc05g012190.2 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch05: 5454884-5456883 Solanum lycopersicum
Solyc05g012190.2 5.0kb upstream 5.0kb upstream 10444 true SL2.50ch05: 5456884-5467327 Solanum lycopersicum
Solyc05g012190.2 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch05: 5462328-5467327 Solanum lycopersicum
Solyc05g012190.2 5.0kb downstream 5.0kb downstream 10444 true SL2.50ch05: 5451884-5462327 Solanum lycopersicum
Solyc05g012190.2 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch05: 5451884-5456883 Solanum lycopersicum
Solyc05g012190.2 10.0kb upstream 10.0kb upstream 15444 true SL2.50ch05: 5456884-5472327 Solanum lycopersicum
Solyc05g012190.2 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch05: 5462328-5472327 Solanum lycopersicum
Solyc05g012190.2 10.0kb downstream 10.0kb downstream 15444 true SL2.50ch05: 5446884-5462327 Solanum lycopersicum
Solyc05g012190.2 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch05: 5446884-5456883 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121471109 5263 Asterids View MSA
123738880 5271 Pentapetalae View MSA
122786580 5272 Eudicot View MSA
122047807 5273 Angiosperm View MSA
121345227 5274 Embryophyte View MSA
123426108 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain