Gene : Solyc05g010780.1 S. lycopersicum ITAG2.4
Defline:  (1 of 174) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Description:  Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat
Genomic Order:  576 Name:  ? Solyc05g010780.1
Secondary Identifier:  ? PAC:36145157
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc05g010780.1 0.5kb upstream 0.5kb upstream 2447 true SL2.50ch05: 4977121-4979567 Solanum lycopersicum
Solyc05g010780.1 0.5kb upstream 0.5kb upstream 500 false SL2.50ch05: 4979068-4979567 Solanum lycopersicum
Solyc05g010780.1 0.5kb downstream 0.5kb downstream 2447 true SL2.50ch05: 4976621-4979067 Solanum lycopersicum
Solyc05g010780.1 0.5kb downstream 0.5kb downstream 500 false SL2.50ch05: 4976621-4977120 Solanum lycopersicum
Solyc05g010780.1 1.0kb upstream 1.0kb upstream 2947 true SL2.50ch05: 4977121-4980067 Solanum lycopersicum
Solyc05g010780.1 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch05: 4979068-4980067 Solanum lycopersicum
Solyc05g010780.1 1.0kb downstream 1.0kb downstream 2947 true SL2.50ch05: 4976121-4979067 Solanum lycopersicum
Solyc05g010780.1 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch05: 4976121-4977120 Solanum lycopersicum
Solyc05g010780.1 2.0kb upstream 2.0kb upstream 3947 true SL2.50ch05: 4977121-4981067 Solanum lycopersicum
Solyc05g010780.1 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch05: 4979068-4981067 Solanum lycopersicum
Solyc05g010780.1 2.0kb downstream 2.0kb downstream 3947 true SL2.50ch05: 4975121-4979067 Solanum lycopersicum
Solyc05g010780.1 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch05: 4975121-4977120 Solanum lycopersicum
Solyc05g010780.1 5.0kb upstream 5.0kb upstream 6947 true SL2.50ch05: 4977121-4984067 Solanum lycopersicum
Solyc05g010780.1 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch05: 4979068-4984067 Solanum lycopersicum
Solyc05g010780.1 5.0kb downstream 5.0kb downstream 6947 true SL2.50ch05: 4972121-4979067 Solanum lycopersicum
Solyc05g010780.1 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch05: 4972121-4977120 Solanum lycopersicum
Solyc05g010780.1 10.0kb upstream 10.0kb upstream 11947 true SL2.50ch05: 4977121-4989067 Solanum lycopersicum
Solyc05g010780.1 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch05: 4979068-4989067 Solanum lycopersicum
Solyc05g010780.1 10.0kb downstream 10.0kb downstream 11947 true SL2.50ch05: 4967121-4979067 Solanum lycopersicum
Solyc05g010780.1 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch05: 4967121-4977120 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121477384 5263 Asterids View MSA
123747473 5271 Pentapetalae View MSA
122794645 5272 Eudicot View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain