Gene : Solyc05g020010.1 S. lycopersicum ITAG2.4
Defline:  (1 of 3) PTHR30128//PTHR30128:SF7 - OUTER MEMBRANE PROTEIN, OMPA-RELATED // SUBFAMILY NOT NAMED Description:  Photosystem I P700 chlorophyll a apoprotein A2 (AHRD V1 *-*- D3WBY4_9MAGN); contains Interpro domain(s) IPR001280 Photosystem I psaA and psaB
Genomic Order:  1180 Name:  ? Solyc05g020010.1
Secondary Identifier:  ? PAC:36144895
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Slycopersicum PHOTOALL-PWY Solanum lycopersicum pathologic  
Slycopersicum PWY-101 Solanum lycopersicum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc05g020010.1 0.5kb upstream 0.5kb upstream 1051 true SL2.50ch05: 25812494-25813544 Solanum lycopersicum
Solyc05g020010.1 0.5kb upstream 0.5kb upstream 500 false SL2.50ch05: 25813045-25813544 Solanum lycopersicum
Solyc05g020010.1 0.5kb downstream 0.5kb downstream 1051 true SL2.50ch05: 25811994-25813044 Solanum lycopersicum
Solyc05g020010.1 0.5kb downstream 0.5kb downstream 500 false SL2.50ch05: 25811994-25812493 Solanum lycopersicum
Solyc05g020010.1 1.0kb upstream 1.0kb upstream 1551 true SL2.50ch05: 25812494-25814044 Solanum lycopersicum
Solyc05g020010.1 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch05: 25813045-25814044 Solanum lycopersicum
Solyc05g020010.1 1.0kb downstream 1.0kb downstream 1551 true SL2.50ch05: 25811494-25813044 Solanum lycopersicum
Solyc05g020010.1 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch05: 25811494-25812493 Solanum lycopersicum
Solyc05g020010.1 2.0kb upstream 2.0kb upstream 2551 true SL2.50ch05: 25812494-25815044 Solanum lycopersicum
Solyc05g020010.1 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch05: 25813045-25815044 Solanum lycopersicum
Solyc05g020010.1 2.0kb downstream 2.0kb downstream 2551 true SL2.50ch05: 25810494-25813044 Solanum lycopersicum
Solyc05g020010.1 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch05: 25810494-25812493 Solanum lycopersicum
Solyc05g020010.1 5.0kb upstream 5.0kb upstream 5551 true SL2.50ch05: 25812494-25818044 Solanum lycopersicum
Solyc05g020010.1 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch05: 25813045-25818044 Solanum lycopersicum
Solyc05g020010.1 5.0kb downstream 5.0kb downstream 5551 true SL2.50ch05: 25807494-25813044 Solanum lycopersicum
Solyc05g020010.1 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch05: 25807494-25812493 Solanum lycopersicum
Solyc05g020010.1 10.0kb upstream 10.0kb upstream 10551 true SL2.50ch05: 25812494-25823044 Solanum lycopersicum
Solyc05g020010.1 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch05: 25813045-25823044 Solanum lycopersicum
Solyc05g020010.1 10.0kb downstream 10.0kb downstream 10551 true SL2.50ch05: 25802494-25813044 Solanum lycopersicum
Solyc05g020010.1 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch05: 25802494-25812493 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029302 5273 Angiosperm View MSA
121367602 5263 Asterids Singleton cluster - no MSA
123753251 5271 Pentapetalae View MSA
122775013 5272 Eudicot View MSA
121350541 5274 Embryophyte View MSA
123381782 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain