Gene : Solyc05g016250.2 S. lycopersicum ITAG2.4
Defline:  (1 of 2) PTHR12419//PTHR12419:SF6 - OTU DOMAIN CONTAINING PROTEIN // SUBFAMILY NOT NAMED Description:  Cysteine-type peptidase (AHRD V1 **** B6U3W2_MAIZE); contains Interpro domain(s) IPR003323 Ovarian tumour, otubain
Genomic Order:  1016 Name:  ? Solyc05g016250.2
Secondary Identifier:  ? PAC:36144798
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc05g016250.2 0.5kb upstream 0.5kb upstream 13608 true SL2.50ch05: 15405287-15418894 Solanum lycopersicum
Solyc05g016250.2 0.5kb upstream 0.5kb upstream 500 false SL2.50ch05: 15418395-15418894 Solanum lycopersicum
Solyc05g016250.2 0.5kb downstream 0.5kb downstream 13608 true SL2.50ch05: 15404787-15418394 Solanum lycopersicum
Solyc05g016250.2 0.5kb downstream 0.5kb downstream 500 false SL2.50ch05: 15404787-15405286 Solanum lycopersicum
Solyc05g016250.2 1.0kb upstream 1.0kb upstream 14108 true SL2.50ch05: 15405287-15419394 Solanum lycopersicum
Solyc05g016250.2 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch05: 15418395-15419394 Solanum lycopersicum
Solyc05g016250.2 1.0kb downstream 1.0kb downstream 14108 true SL2.50ch05: 15404287-15418394 Solanum lycopersicum
Solyc05g016250.2 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch05: 15404287-15405286 Solanum lycopersicum
Solyc05g016250.2 2.0kb upstream 2.0kb upstream 15108 true SL2.50ch05: 15405287-15420394 Solanum lycopersicum
Solyc05g016250.2 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch05: 15418395-15420394 Solanum lycopersicum
Solyc05g016250.2 2.0kb downstream 2.0kb downstream 15108 true SL2.50ch05: 15403287-15418394 Solanum lycopersicum
Solyc05g016250.2 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch05: 15403287-15405286 Solanum lycopersicum
Solyc05g016250.2 5.0kb upstream 5.0kb upstream 18108 true SL2.50ch05: 15405287-15423394 Solanum lycopersicum
Solyc05g016250.2 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch05: 15418395-15423394 Solanum lycopersicum
Solyc05g016250.2 5.0kb downstream 5.0kb downstream 18108 true SL2.50ch05: 15400287-15418394 Solanum lycopersicum
Solyc05g016250.2 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch05: 15400287-15405286 Solanum lycopersicum
Solyc05g016250.2 10.0kb upstream 10.0kb upstream 23108 true SL2.50ch05: 15405287-15428394 Solanum lycopersicum
Solyc05g016250.2 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch05: 15418395-15428394 Solanum lycopersicum
Solyc05g016250.2 10.0kb downstream 10.0kb downstream 23108 true SL2.50ch05: 15395287-15418394 Solanum lycopersicum
Solyc05g016250.2 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch05: 15395287-15405286 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121478514 5263 Asterids View MSA
123751936 5271 Pentapetalae View MSA
122788372 5272 Eudicot View MSA
122048999 5273 Angiosperm View MSA
121348332 5274 Embryophyte View MSA
123428461 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain