Gene : Solyc06g005140.2 S. lycopersicum ITAG2.4
Defline:  (1 of 174) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Description:  Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M3C7_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat
Genomic Order:  15 Name:  ? Solyc06g005140.2
Secondary Identifier:  ? PAC:36130945
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc06g005140.2 0.5kb upstream 0.5kb upstream 4142 true SL2.50ch06: 165496-169637 Solanum lycopersicum
Solyc06g005140.2 0.5kb upstream 0.5kb upstream 500 false SL2.50ch06: 169138-169637 Solanum lycopersicum
Solyc06g005140.2 0.5kb downstream 0.5kb downstream 4142 true SL2.50ch06: 164996-169137 Solanum lycopersicum
Solyc06g005140.2 0.5kb downstream 0.5kb downstream 500 false SL2.50ch06: 164996-165495 Solanum lycopersicum
Solyc06g005140.2 1.0kb upstream 1.0kb upstream 4642 true SL2.50ch06: 165496-170137 Solanum lycopersicum
Solyc06g005140.2 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch06: 169138-170137 Solanum lycopersicum
Solyc06g005140.2 1.0kb downstream 1.0kb downstream 4642 true SL2.50ch06: 164496-169137 Solanum lycopersicum
Solyc06g005140.2 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch06: 164496-165495 Solanum lycopersicum
Solyc06g005140.2 2.0kb upstream 2.0kb upstream 5642 true SL2.50ch06: 165496-171137 Solanum lycopersicum
Solyc06g005140.2 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch06: 169138-171137 Solanum lycopersicum
Solyc06g005140.2 2.0kb downstream 2.0kb downstream 5642 true SL2.50ch06: 163496-169137 Solanum lycopersicum
Solyc06g005140.2 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch06: 163496-165495 Solanum lycopersicum
Solyc06g005140.2 5.0kb upstream 5.0kb upstream 8642 true SL2.50ch06: 165496-174137 Solanum lycopersicum
Solyc06g005140.2 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch06: 169138-174137 Solanum lycopersicum
Solyc06g005140.2 5.0kb downstream 5.0kb downstream 8642 true SL2.50ch06: 160496-169137 Solanum lycopersicum
Solyc06g005140.2 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch06: 160496-165495 Solanum lycopersicum
Solyc06g005140.2 10.0kb upstream 10.0kb upstream 13642 true SL2.50ch06: 165496-179137 Solanum lycopersicum
Solyc06g005140.2 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch06: 169138-179137 Solanum lycopersicum
Solyc06g005140.2 10.0kb downstream 10.0kb downstream 13642 true SL2.50ch06: 155496-169137 Solanum lycopersicum
Solyc06g005140.2 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch06: 155496-165495 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121477851 5263 Asterids View MSA
123739540 5271 Pentapetalae View MSA
122790225 5272 Eudicot View MSA
122049132 5273 Angiosperm View MSA
121351065 5274 Embryophyte View MSA
123381996 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain