Gene : Solyc06g062300.1 S. lycopersicum ITAG2.4
Defline:  (1 of 7) PTHR10209:SF211 - 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED Description:  2-oxoglutarate-dependent dioxygenase (Fragment) (AHRD V1 ***- Q944Z5_ARATH); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase
Genomic Order:  1389 Name:  ? Solyc06g062300.1
Secondary Identifier:  ? PAC:36128565
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

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Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc06g062300.1 0.5kb upstream 0.5kb upstream 976 true SL2.50ch06: 39303717-39304692 Solanum lycopersicum
Solyc06g062300.1 0.5kb upstream 0.5kb upstream 500 false SL2.50ch06: 39304193-39304692 Solanum lycopersicum
Solyc06g062300.1 0.5kb downstream 0.5kb downstream 976 true SL2.50ch06: 39303217-39304192 Solanum lycopersicum
Solyc06g062300.1 0.5kb downstream 0.5kb downstream 500 false SL2.50ch06: 39303217-39303716 Solanum lycopersicum
Solyc06g062300.1 1.0kb upstream 1.0kb upstream 1476 true SL2.50ch06: 39303717-39305192 Solanum lycopersicum
Solyc06g062300.1 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch06: 39304193-39305192 Solanum lycopersicum
Solyc06g062300.1 1.0kb downstream 1.0kb downstream 1476 true SL2.50ch06: 39302717-39304192 Solanum lycopersicum
Solyc06g062300.1 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch06: 39302717-39303716 Solanum lycopersicum
Solyc06g062300.1 2.0kb upstream 2.0kb upstream 2476 true SL2.50ch06: 39303717-39306192 Solanum lycopersicum
Solyc06g062300.1 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch06: 39304193-39306192 Solanum lycopersicum
Solyc06g062300.1 2.0kb downstream 2.0kb downstream 2476 true SL2.50ch06: 39301717-39304192 Solanum lycopersicum
Solyc06g062300.1 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch06: 39301717-39303716 Solanum lycopersicum
Solyc06g062300.1 5.0kb upstream 5.0kb upstream 5476 true SL2.50ch06: 39303717-39309192 Solanum lycopersicum
Solyc06g062300.1 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch06: 39304193-39309192 Solanum lycopersicum
Solyc06g062300.1 5.0kb downstream 5.0kb downstream 5476 true SL2.50ch06: 39298717-39304192 Solanum lycopersicum
Solyc06g062300.1 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch06: 39298717-39303716 Solanum lycopersicum
Solyc06g062300.1 10.0kb upstream 10.0kb upstream 10476 true SL2.50ch06: 39303717-39314192 Solanum lycopersicum
Solyc06g062300.1 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch06: 39304193-39314192 Solanum lycopersicum
Solyc06g062300.1 10.0kb downstream 10.0kb downstream 10476 true SL2.50ch06: 39293717-39304192 Solanum lycopersicum
Solyc06g062300.1 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch06: 39293717-39303716 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121368074 5263 Asterids Singleton cluster - no MSA
123752676 5271 Pentapetalae View MSA
122774719 5272 Eudicot View MSA
122051611 5273 Angiosperm View MSA
123429101 5275 Viridiplantae View MSA
121351374 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain