Gene : Solyc06g060790.1 S. lycopersicum ITAG2.4
Defline:  (1 of 1) K01704 - 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit (leuD) Description:  3-isopropylmalate dehydratase small subunit (AHRD V1 ***- Q9ZW85_ARATH); contains Interpro domain(s) IPR011827 3-isopropylmalate dehydratase, small subunit, subgroup
Genomic Order:  1337 Name:  ? Solyc06g060790.1
Secondary Identifier:  ? PAC:36130048
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Slycopersicum BRANCHED-CHAIN-AA-SYN-PWY Solanum lycopersicum pathologic  
Slycopersicum LEUSYN-PWY Solanum lycopersicum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc06g060790.1 0.5kb upstream 0.5kb upstream 1271 true SL2.50ch06: 38814018-38815288 Solanum lycopersicum
Solyc06g060790.1 0.5kb upstream 0.5kb upstream 500 false SL2.50ch06: 38814789-38815288 Solanum lycopersicum
Solyc06g060790.1 0.5kb downstream 0.5kb downstream 1271 true SL2.50ch06: 38813518-38814788 Solanum lycopersicum
Solyc06g060790.1 0.5kb downstream 0.5kb downstream 500 false SL2.50ch06: 38813518-38814017 Solanum lycopersicum
Solyc06g060790.1 1.0kb upstream 1.0kb upstream 1771 true SL2.50ch06: 38814018-38815788 Solanum lycopersicum
Solyc06g060790.1 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch06: 38814789-38815788 Solanum lycopersicum
Solyc06g060790.1 1.0kb downstream 1.0kb downstream 1771 true SL2.50ch06: 38813018-38814788 Solanum lycopersicum
Solyc06g060790.1 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch06: 38813018-38814017 Solanum lycopersicum
Solyc06g060790.1 2.0kb upstream 2.0kb upstream 2771 true SL2.50ch06: 38814018-38816788 Solanum lycopersicum
Solyc06g060790.1 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch06: 38814789-38816788 Solanum lycopersicum
Solyc06g060790.1 2.0kb downstream 2.0kb downstream 2771 true SL2.50ch06: 38812018-38814788 Solanum lycopersicum
Solyc06g060790.1 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch06: 38812018-38814017 Solanum lycopersicum
Solyc06g060790.1 5.0kb upstream 5.0kb upstream 5771 true SL2.50ch06: 38814018-38819788 Solanum lycopersicum
Solyc06g060790.1 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch06: 38814789-38819788 Solanum lycopersicum
Solyc06g060790.1 5.0kb downstream 5.0kb downstream 5771 true SL2.50ch06: 38809018-38814788 Solanum lycopersicum
Solyc06g060790.1 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch06: 38809018-38814017 Solanum lycopersicum
Solyc06g060790.1 10.0kb upstream 10.0kb upstream 10771 true SL2.50ch06: 38814018-38824788 Solanum lycopersicum
Solyc06g060790.1 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch06: 38814789-38824788 Solanum lycopersicum
Solyc06g060790.1 10.0kb downstream 10.0kb downstream 10771 true SL2.50ch06: 38804018-38814788 Solanum lycopersicum
Solyc06g060790.1 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch06: 38804018-38814017 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040980 5273 Angiosperm View MSA
121475512 5263 Asterids View MSA
123736502 5271 Pentapetalae View MSA
122789957 5272 Eudicot View MSA
121345878 5274 Embryophyte View MSA
123423763 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain