Gene : Solyc06g075350.1 S. lycopersicum ITAG2.4
Defline:  (1 of 1) 4.6.1.16 - tRNA-intron lyase / tRNA splicing endonuclease Description:  tRNA-splicing endonuclease (AHRD V1 *-*- ENDA_SULSO); contains Interpro domain(s) IPR006677 tRNA intron endonuclease, catalytic domain-like
Genomic Order:  2388 Name:  ? Solyc06g075350.1
Secondary Identifier:  ? PAC:36129289
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Slycopersicum PWY-6689 Solanum lycopersicum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc06g075350.1 0.5kb upstream 0.5kb upstream 1232 true SL2.50ch06: 46774528-46775759 Solanum lycopersicum
Solyc06g075350.1 0.5kb upstream 0.5kb upstream 500 false SL2.50ch06: 46774528-46775027 Solanum lycopersicum
Solyc06g075350.1 0.5kb downstream 0.5kb downstream 1232 true SL2.50ch06: 46775028-46776259 Solanum lycopersicum
Solyc06g075350.1 0.5kb downstream 0.5kb downstream 500 false SL2.50ch06: 46775760-46776259 Solanum lycopersicum
Solyc06g075350.1 1.0kb upstream 1.0kb upstream 1732 true SL2.50ch06: 46774028-46775759 Solanum lycopersicum
Solyc06g075350.1 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch06: 46774028-46775027 Solanum lycopersicum
Solyc06g075350.1 1.0kb downstream 1.0kb downstream 1732 true SL2.50ch06: 46775028-46776759 Solanum lycopersicum
Solyc06g075350.1 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch06: 46775760-46776759 Solanum lycopersicum
Solyc06g075350.1 2.0kb upstream 2.0kb upstream 2732 true SL2.50ch06: 46773028-46775759 Solanum lycopersicum
Solyc06g075350.1 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch06: 46773028-46775027 Solanum lycopersicum
Solyc06g075350.1 2.0kb downstream 2.0kb downstream 2732 true SL2.50ch06: 46775028-46777759 Solanum lycopersicum
Solyc06g075350.1 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch06: 46775760-46777759 Solanum lycopersicum
Solyc06g075350.1 5.0kb upstream 5.0kb upstream 5732 true SL2.50ch06: 46770028-46775759 Solanum lycopersicum
Solyc06g075350.1 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch06: 46770028-46775027 Solanum lycopersicum
Solyc06g075350.1 5.0kb downstream 5.0kb downstream 5732 true SL2.50ch06: 46775028-46780759 Solanum lycopersicum
Solyc06g075350.1 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch06: 46775760-46780759 Solanum lycopersicum
Solyc06g075350.1 10.0kb upstream 10.0kb upstream 10732 true SL2.50ch06: 46765028-46775759 Solanum lycopersicum
Solyc06g075350.1 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch06: 46765028-46775027 Solanum lycopersicum
Solyc06g075350.1 10.0kb downstream 10.0kb downstream 10732 true SL2.50ch06: 46775028-46785759 Solanum lycopersicum
Solyc06g075350.1 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch06: 46775760-46785759 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041240 5273 Angiosperm View MSA
121474404 5263 Asterids View MSA
123739625 5271 Pentapetalae View MSA
122788641 5272 Eudicot View MSA
123429143 5275 Viridiplantae View MSA
121344093 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain