Gene : Solyc06g082880.1 S. lycopersicum ITAG2.4
Defline:  (1 of 174) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Description:  Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KZF9_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat
Genomic Order:  2638 Name:  ? Solyc06g082880.1
Secondary Identifier:  ? PAC:36130940
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc06g082880.1 0.5kb upstream 0.5kb upstream 3334 true SL2.50ch06: 48519002-48522335 Solanum lycopersicum
Solyc06g082880.1 0.5kb upstream 0.5kb upstream 500 false SL2.50ch06: 48519002-48519501 Solanum lycopersicum
Solyc06g082880.1 0.5kb downstream 0.5kb downstream 3334 true SL2.50ch06: 48519502-48522835 Solanum lycopersicum
Solyc06g082880.1 0.5kb downstream 0.5kb downstream 500 false SL2.50ch06: 48522336-48522835 Solanum lycopersicum
Solyc06g082880.1 1.0kb upstream 1.0kb upstream 3834 true SL2.50ch06: 48518502-48522335 Solanum lycopersicum
Solyc06g082880.1 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch06: 48518502-48519501 Solanum lycopersicum
Solyc06g082880.1 1.0kb downstream 1.0kb downstream 3834 true SL2.50ch06: 48519502-48523335 Solanum lycopersicum
Solyc06g082880.1 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch06: 48522336-48523335 Solanum lycopersicum
Solyc06g082880.1 2.0kb upstream 2.0kb upstream 4834 true SL2.50ch06: 48517502-48522335 Solanum lycopersicum
Solyc06g082880.1 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch06: 48517502-48519501 Solanum lycopersicum
Solyc06g082880.1 2.0kb downstream 2.0kb downstream 4834 true SL2.50ch06: 48519502-48524335 Solanum lycopersicum
Solyc06g082880.1 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch06: 48522336-48524335 Solanum lycopersicum
Solyc06g082880.1 5.0kb upstream 5.0kb upstream 7834 true SL2.50ch06: 48514502-48522335 Solanum lycopersicum
Solyc06g082880.1 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch06: 48514502-48519501 Solanum lycopersicum
Solyc06g082880.1 5.0kb downstream 5.0kb downstream 7834 true SL2.50ch06: 48519502-48527335 Solanum lycopersicum
Solyc06g082880.1 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch06: 48522336-48527335 Solanum lycopersicum
Solyc06g082880.1 10.0kb upstream 10.0kb upstream 12834 true SL2.50ch06: 48509502-48522335 Solanum lycopersicum
Solyc06g082880.1 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch06: 48509502-48519501 Solanum lycopersicum
Solyc06g082880.1 10.0kb downstream 10.0kb downstream 12834 true SL2.50ch06: 48519502-48532335 Solanum lycopersicum
Solyc06g082880.1 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch06: 48522336-48532335 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121467339 5263 Asterids View MSA
123736958 5271 Pentapetalae View MSA
122790433 5272 Eudicot View MSA
122047420 5273 Angiosperm View MSA
121310738 5274 Embryophyte View MSA
123348150 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain