Gene : Solyc11g005960.1 S. lycopersicum ITAG2.4
Defline:  (1 of 67) PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Description:  Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KIA6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat
Genomic Order:  97 Name:  ? Solyc11g005960.1
Secondary Identifier:  ? PAC:36152785
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc11g005960.1 0.5kb upstream 0.5kb upstream 2780 true SL2.50ch11: 767352-770131 Solanum lycopersicum
Solyc11g005960.1 0.5kb upstream 0.5kb upstream 500 false SL2.50ch11: 769632-770131 Solanum lycopersicum
Solyc11g005960.1 0.5kb downstream 0.5kb downstream 2780 true SL2.50ch11: 766852-769631 Solanum lycopersicum
Solyc11g005960.1 0.5kb downstream 0.5kb downstream 500 false SL2.50ch11: 766852-767351 Solanum lycopersicum
Solyc11g005960.1 1.0kb upstream 1.0kb upstream 3280 true SL2.50ch11: 767352-770631 Solanum lycopersicum
Solyc11g005960.1 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch11: 769632-770631 Solanum lycopersicum
Solyc11g005960.1 1.0kb downstream 1.0kb downstream 3280 true SL2.50ch11: 766352-769631 Solanum lycopersicum
Solyc11g005960.1 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch11: 766352-767351 Solanum lycopersicum
Solyc11g005960.1 2.0kb upstream 2.0kb upstream 4280 true SL2.50ch11: 767352-771631 Solanum lycopersicum
Solyc11g005960.1 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch11: 769632-771631 Solanum lycopersicum
Solyc11g005960.1 2.0kb downstream 2.0kb downstream 4280 true SL2.50ch11: 765352-769631 Solanum lycopersicum
Solyc11g005960.1 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch11: 765352-767351 Solanum lycopersicum
Solyc11g005960.1 5.0kb upstream 5.0kb upstream 7280 true SL2.50ch11: 767352-774631 Solanum lycopersicum
Solyc11g005960.1 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch11: 769632-774631 Solanum lycopersicum
Solyc11g005960.1 5.0kb downstream 5.0kb downstream 7280 true SL2.50ch11: 762352-769631 Solanum lycopersicum
Solyc11g005960.1 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch11: 762352-767351 Solanum lycopersicum
Solyc11g005960.1 10.0kb upstream 10.0kb upstream 12280 true SL2.50ch11: 767352-779631 Solanum lycopersicum
Solyc11g005960.1 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch11: 769632-779631 Solanum lycopersicum
Solyc11g005960.1 10.0kb downstream 10.0kb downstream 12280 true SL2.50ch11: 757352-769631 Solanum lycopersicum
Solyc11g005960.1 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch11: 757352-767351 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121474295 5263 Asterids View MSA
123740477 5271 Pentapetalae View MSA
122791642 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain