Gene : Solyc11g008320.1 S. lycopersicum ITAG2.4
Defline:  (1 of 4) K11450 - lysine-specific histone demethylase 1 [EC:1.-.-.-] (AOF2, LSD1) Description:  Lysine-specific histone demethylase 1 (AHRD V1 *--- B2WC79_PYRTR); contains Interpro domain(s) IPR002937 Amine oxidase
Genomic Order:  330 Name:  ? Solyc11g008320.1
Secondary Identifier:  ? PAC:36152936
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Slycopersicum PWY-6117 Solanum lycopersicum pathologic  
Slycopersicum PWY-6441 Solanum lycopersicum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc11g008320.1 0.5kb upstream 0.5kb upstream 5274 true SL2.50ch11: 2523911-2529184 Solanum lycopersicum
Solyc11g008320.1 0.5kb upstream 0.5kb upstream 500 false SL2.50ch11: 2528685-2529184 Solanum lycopersicum
Solyc11g008320.1 0.5kb downstream 0.5kb downstream 5274 true SL2.50ch11: 2523411-2528684 Solanum lycopersicum
Solyc11g008320.1 0.5kb downstream 0.5kb downstream 500 false SL2.50ch11: 2523411-2523910 Solanum lycopersicum
Solyc11g008320.1 1.0kb upstream 1.0kb upstream 5774 true SL2.50ch11: 2523911-2529684 Solanum lycopersicum
Solyc11g008320.1 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch11: 2528685-2529684 Solanum lycopersicum
Solyc11g008320.1 1.0kb downstream 1.0kb downstream 5774 true SL2.50ch11: 2522911-2528684 Solanum lycopersicum
Solyc11g008320.1 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch11: 2522911-2523910 Solanum lycopersicum
Solyc11g008320.1 2.0kb upstream 2.0kb upstream 6774 true SL2.50ch11: 2523911-2530684 Solanum lycopersicum
Solyc11g008320.1 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch11: 2528685-2530684 Solanum lycopersicum
Solyc11g008320.1 2.0kb downstream 2.0kb downstream 6774 true SL2.50ch11: 2521911-2528684 Solanum lycopersicum
Solyc11g008320.1 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch11: 2521911-2523910 Solanum lycopersicum
Solyc11g008320.1 5.0kb upstream 5.0kb upstream 9774 true SL2.50ch11: 2523911-2533684 Solanum lycopersicum
Solyc11g008320.1 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch11: 2528685-2533684 Solanum lycopersicum
Solyc11g008320.1 5.0kb downstream 5.0kb downstream 9774 true SL2.50ch11: 2518911-2528684 Solanum lycopersicum
Solyc11g008320.1 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch11: 2518911-2523910 Solanum lycopersicum
Solyc11g008320.1 10.0kb upstream 10.0kb upstream 14774 true SL2.50ch11: 2523911-2538684 Solanum lycopersicum
Solyc11g008320.1 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch11: 2528685-2538684 Solanum lycopersicum
Solyc11g008320.1 10.0kb downstream 10.0kb downstream 14774 true SL2.50ch11: 2513911-2528684 Solanum lycopersicum
Solyc11g008320.1 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch11: 2513911-2523910 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121466729 5263 Asterids View MSA
123736657 5271 Pentapetalae View MSA
122791898 5272 Eudicot View MSA
122046966 5273 Angiosperm View MSA
121350960 5274 Embryophyte View MSA
123428250 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain