Gene : Solyc11g008580.1 S. lycopersicum ITAG2.4
Defline:  (1 of 2) PTHR11685:SF154 - E3 UBIQUITIN-PROTEIN LIGASE ARI5-RELATED Description:  Ariadne-like ubiquitin ligase (AHRD V1 **-- D3AZ84_POLPA); contains Interpro domain(s) IPR002867 Zinc finger, C6HC-type
Genomic Order:  356 Name:  ? Solyc11g008580.1
Secondary Identifier:  ? PAC:36153554
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Slycopersicum PWY-7511 Solanum lycopersicum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc11g008580.1 0.5kb upstream 0.5kb upstream 10998 true SL2.50ch11: 2764823-2775820 Solanum lycopersicum
Solyc11g008580.1 0.5kb upstream 0.5kb upstream 500 false SL2.50ch11: 2775321-2775820 Solanum lycopersicum
Solyc11g008580.1 0.5kb downstream 0.5kb downstream 10998 true SL2.50ch11: 2764323-2775320 Solanum lycopersicum
Solyc11g008580.1 0.5kb downstream 0.5kb downstream 500 false SL2.50ch11: 2764323-2764822 Solanum lycopersicum
Solyc11g008580.1 1.0kb upstream 1.0kb upstream 11498 true SL2.50ch11: 2764823-2776320 Solanum lycopersicum
Solyc11g008580.1 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch11: 2775321-2776320 Solanum lycopersicum
Solyc11g008580.1 1.0kb downstream 1.0kb downstream 11498 true SL2.50ch11: 2763823-2775320 Solanum lycopersicum
Solyc11g008580.1 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch11: 2763823-2764822 Solanum lycopersicum
Solyc11g008580.1 2.0kb upstream 2.0kb upstream 12498 true SL2.50ch11: 2764823-2777320 Solanum lycopersicum
Solyc11g008580.1 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch11: 2775321-2777320 Solanum lycopersicum
Solyc11g008580.1 2.0kb downstream 2.0kb downstream 12498 true SL2.50ch11: 2762823-2775320 Solanum lycopersicum
Solyc11g008580.1 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch11: 2762823-2764822 Solanum lycopersicum
Solyc11g008580.1 5.0kb upstream 5.0kb upstream 15498 true SL2.50ch11: 2764823-2780320 Solanum lycopersicum
Solyc11g008580.1 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch11: 2775321-2780320 Solanum lycopersicum
Solyc11g008580.1 5.0kb downstream 5.0kb downstream 15498 true SL2.50ch11: 2759823-2775320 Solanum lycopersicum
Solyc11g008580.1 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch11: 2759823-2764822 Solanum lycopersicum
Solyc11g008580.1 10.0kb upstream 10.0kb upstream 20498 true SL2.50ch11: 2764823-2785320 Solanum lycopersicum
Solyc11g008580.1 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch11: 2775321-2785320 Solanum lycopersicum
Solyc11g008580.1 10.0kb downstream 10.0kb downstream 20498 true SL2.50ch11: 2754823-2775320 Solanum lycopersicum
Solyc11g008580.1 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch11: 2754823-2764822 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121469883 5263 Asterids View MSA
123742457 5271 Pentapetalae View MSA
122787924 5272 Eudicot View MSA
122045508 5273 Angiosperm View MSA
121343931 5274 Embryophyte View MSA
123428000 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain