Gene : Solyc11g028020.1 S. lycopersicum ITAG2.4
Defline:  (1 of 2) PTHR11945:SF187 - FLORAL HOMEOTIC PROTEIN AGAMOUS Description:  Agamous MADS-box transcription factor (AHRD V1 ***- B2CDE2_9ASPA); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box IPR002487 Transcription factor, K-box
Genomic Order:  1139 Name:  ? Solyc11g028020.1
Secondary Identifier:  ? PAC:36152019
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc11g028020.1 0.5kb upstream 0.5kb upstream 8625 true SL2.50ch11: 19912270-19920894 Solanum lycopersicum
Solyc11g028020.1 0.5kb upstream 0.5kb upstream 500 false SL2.50ch11: 19920395-19920894 Solanum lycopersicum
Solyc11g028020.1 0.5kb downstream 0.5kb downstream 8625 true SL2.50ch11: 19911770-19920394 Solanum lycopersicum
Solyc11g028020.1 0.5kb downstream 0.5kb downstream 500 false SL2.50ch11: 19911770-19912269 Solanum lycopersicum
Solyc11g028020.1 1.0kb upstream 1.0kb upstream 9125 true SL2.50ch11: 19912270-19921394 Solanum lycopersicum
Solyc11g028020.1 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch11: 19920395-19921394 Solanum lycopersicum
Solyc11g028020.1 1.0kb downstream 1.0kb downstream 9125 true SL2.50ch11: 19911270-19920394 Solanum lycopersicum
Solyc11g028020.1 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch11: 19911270-19912269 Solanum lycopersicum
Solyc11g028020.1 2.0kb upstream 2.0kb upstream 10125 true SL2.50ch11: 19912270-19922394 Solanum lycopersicum
Solyc11g028020.1 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch11: 19920395-19922394 Solanum lycopersicum
Solyc11g028020.1 2.0kb downstream 2.0kb downstream 10125 true SL2.50ch11: 19910270-19920394 Solanum lycopersicum
Solyc11g028020.1 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch11: 19910270-19912269 Solanum lycopersicum
Solyc11g028020.1 5.0kb upstream 5.0kb upstream 13125 true SL2.50ch11: 19912270-19925394 Solanum lycopersicum
Solyc11g028020.1 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch11: 19920395-19925394 Solanum lycopersicum
Solyc11g028020.1 5.0kb downstream 5.0kb downstream 13125 true SL2.50ch11: 19907270-19920394 Solanum lycopersicum
Solyc11g028020.1 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch11: 19907270-19912269 Solanum lycopersicum
Solyc11g028020.1 10.0kb upstream 10.0kb upstream 18125 true SL2.50ch11: 19912270-19930394 Solanum lycopersicum
Solyc11g028020.1 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch11: 19920395-19930394 Solanum lycopersicum
Solyc11g028020.1 10.0kb downstream 10.0kb downstream 18125 true SL2.50ch11: 19902270-19920394 Solanum lycopersicum
Solyc11g028020.1 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch11: 19902270-19912269 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121474448 5263 Asterids View MSA
123747867 5271 Pentapetalae View MSA
122793842 5272 Eudicot View MSA
122049629 5273 Angiosperm View MSA
121350957 5274 Embryophyte View MSA
123424057 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain