Gene : Solyc11g066370.1 S. lycopersicum ITAG2.4
Defline:  (1 of 1) PTHR10459:SF10 - DNA LIGASE 1 Description:  DNA ligase (AHRD V1 ***- B9HQN9_POPTR); contains Interpro domain(s) IPR000977 ATP-dependent DNA ligase
Genomic Order:  1889 Name:  ? Solyc11g066370.1
Secondary Identifier:  ? PAC:36153521
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc11g066370.1 0.5kb upstream 0.5kb upstream 13579 true SL2.50ch11: 52125256-52138834 Solanum lycopersicum
Solyc11g066370.1 0.5kb upstream 0.5kb upstream 500 false SL2.50ch11: 52138335-52138834 Solanum lycopersicum
Solyc11g066370.1 0.5kb downstream 0.5kb downstream 13579 true SL2.50ch11: 52124756-52138334 Solanum lycopersicum
Solyc11g066370.1 0.5kb downstream 0.5kb downstream 500 false SL2.50ch11: 52124756-52125255 Solanum lycopersicum
Solyc11g066370.1 1.0kb upstream 1.0kb upstream 14079 true SL2.50ch11: 52125256-52139334 Solanum lycopersicum
Solyc11g066370.1 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch11: 52138335-52139334 Solanum lycopersicum
Solyc11g066370.1 1.0kb downstream 1.0kb downstream 14079 true SL2.50ch11: 52124256-52138334 Solanum lycopersicum
Solyc11g066370.1 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch11: 52124256-52125255 Solanum lycopersicum
Solyc11g066370.1 2.0kb upstream 2.0kb upstream 15079 true SL2.50ch11: 52125256-52140334 Solanum lycopersicum
Solyc11g066370.1 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch11: 52138335-52140334 Solanum lycopersicum
Solyc11g066370.1 2.0kb downstream 2.0kb downstream 15079 true SL2.50ch11: 52123256-52138334 Solanum lycopersicum
Solyc11g066370.1 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch11: 52123256-52125255 Solanum lycopersicum
Solyc11g066370.1 5.0kb upstream 5.0kb upstream 18079 true SL2.50ch11: 52125256-52143334 Solanum lycopersicum
Solyc11g066370.1 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch11: 52138335-52143334 Solanum lycopersicum
Solyc11g066370.1 5.0kb downstream 5.0kb downstream 18079 true SL2.50ch11: 52120256-52138334 Solanum lycopersicum
Solyc11g066370.1 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch11: 52120256-52125255 Solanum lycopersicum
Solyc11g066370.1 10.0kb upstream 10.0kb upstream 23079 true SL2.50ch11: 52125256-52148334 Solanum lycopersicum
Solyc11g066370.1 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch11: 52138335-52148334 Solanum lycopersicum
Solyc11g066370.1 10.0kb downstream 10.0kb downstream 23079 true SL2.50ch11: 52115256-52138334 Solanum lycopersicum
Solyc11g066370.1 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch11: 52115256-52125255 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121481001 5263 Asterids View MSA
123746296 5271 Pentapetalae View MSA
122793355 5272 Eudicot View MSA
122047557 5273 Angiosperm View MSA
121348285 5274 Embryophyte View MSA
123426430 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain