Gene : Solyc11g070040.1 S. lycopersicum ITAG2.4
Defline:  (1 of 27) PF01535//PF12854//PF13041 - PPR repeat (PPR) // PPR repeat (PPR_1) // PPR repeat family (PPR_2) Description:  Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KUI4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat
Genomic Order:  2157 Name:  ? Solyc11g070040.1
Secondary Identifier:  ? PAC:36151644
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc11g070040.1 0.5kb upstream 0.5kb upstream 1937 true SL2.50ch11: 54599590-54601526 Solanum lycopersicum
Solyc11g070040.1 0.5kb upstream 0.5kb upstream 500 false SL2.50ch11: 54599590-54600089 Solanum lycopersicum
Solyc11g070040.1 0.5kb downstream 0.5kb downstream 1937 true SL2.50ch11: 54600090-54602026 Solanum lycopersicum
Solyc11g070040.1 0.5kb downstream 0.5kb downstream 500 false SL2.50ch11: 54601527-54602026 Solanum lycopersicum
Solyc11g070040.1 1.0kb upstream 1.0kb upstream 2437 true SL2.50ch11: 54599090-54601526 Solanum lycopersicum
Solyc11g070040.1 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch11: 54599090-54600089 Solanum lycopersicum
Solyc11g070040.1 1.0kb downstream 1.0kb downstream 2437 true SL2.50ch11: 54600090-54602526 Solanum lycopersicum
Solyc11g070040.1 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch11: 54601527-54602526 Solanum lycopersicum
Solyc11g070040.1 2.0kb upstream 2.0kb upstream 3437 true SL2.50ch11: 54598090-54601526 Solanum lycopersicum
Solyc11g070040.1 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch11: 54598090-54600089 Solanum lycopersicum
Solyc11g070040.1 2.0kb downstream 2.0kb downstream 3437 true SL2.50ch11: 54600090-54603526 Solanum lycopersicum
Solyc11g070040.1 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch11: 54601527-54603526 Solanum lycopersicum
Solyc11g070040.1 5.0kb upstream 5.0kb upstream 6437 true SL2.50ch11: 54595090-54601526 Solanum lycopersicum
Solyc11g070040.1 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch11: 54595090-54600089 Solanum lycopersicum
Solyc11g070040.1 5.0kb downstream 5.0kb downstream 6437 true SL2.50ch11: 54600090-54606526 Solanum lycopersicum
Solyc11g070040.1 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch11: 54601527-54606526 Solanum lycopersicum
Solyc11g070040.1 10.0kb upstream 10.0kb upstream 11437 true SL2.50ch11: 54590090-54601526 Solanum lycopersicum
Solyc11g070040.1 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch11: 54590090-54600089 Solanum lycopersicum
Solyc11g070040.1 10.0kb downstream 10.0kb downstream 11437 true SL2.50ch11: 54600090-54611526 Solanum lycopersicum
Solyc11g070040.1 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch11: 54601527-54611526 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121471604 5263 Asterids View MSA
123739132 5271 Pentapetalae View MSA
122788969 5272 Eudicot View MSA
122045173 5273 Angiosperm View MSA
121310410 5274 Embryophyte View MSA
123347900 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain