Gene : Solyc00g008680.2 S. lycopersicum ITAG2.4
Defline:  (1 of 1) PTHR10827:SF52 - IP16409P Description:  Calcium binding protein-like (AHRD V1 *--- Q656S9_ORYSJ); contains Interpro domain(s) IPR011992 EF-Hand type
Genomic Order:  145 Name:  ? Solyc00g008680.2
Secondary Identifier:  ? PAC:36127661
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc00g008680.2 0.5kb upstream 0.5kb upstream 18843 true SL2.50ch00: 8472634-8491476 Solanum lycopersicum
Solyc00g008680.2 0.5kb upstream 0.5kb upstream 500 false SL2.50ch00: 8472634-8473133 Solanum lycopersicum
Solyc00g008680.2 0.5kb downstream 0.5kb downstream 18843 true SL2.50ch00: 8473134-8491976 Solanum lycopersicum
Solyc00g008680.2 0.5kb downstream 0.5kb downstream 500 false SL2.50ch00: 8491477-8491976 Solanum lycopersicum
Solyc00g008680.2 1.0kb upstream 1.0kb upstream 19343 true SL2.50ch00: 8472134-8491476 Solanum lycopersicum
Solyc00g008680.2 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch00: 8472134-8473133 Solanum lycopersicum
Solyc00g008680.2 1.0kb downstream 1.0kb downstream 19343 true SL2.50ch00: 8473134-8492476 Solanum lycopersicum
Solyc00g008680.2 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch00: 8491477-8492476 Solanum lycopersicum
Solyc00g008680.2 2.0kb upstream 2.0kb upstream 20343 true SL2.50ch00: 8471134-8491476 Solanum lycopersicum
Solyc00g008680.2 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch00: 8471134-8473133 Solanum lycopersicum
Solyc00g008680.2 2.0kb downstream 2.0kb downstream 20343 true SL2.50ch00: 8473134-8493476 Solanum lycopersicum
Solyc00g008680.2 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch00: 8491477-8493476 Solanum lycopersicum
Solyc00g008680.2 5.0kb upstream 5.0kb upstream 23343 true SL2.50ch00: 8468134-8491476 Solanum lycopersicum
Solyc00g008680.2 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch00: 8468134-8473133 Solanum lycopersicum
Solyc00g008680.2 5.0kb downstream 5.0kb downstream 23343 true SL2.50ch00: 8473134-8496476 Solanum lycopersicum
Solyc00g008680.2 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch00: 8491477-8496476 Solanum lycopersicum
Solyc00g008680.2 10.0kb upstream 10.0kb upstream 28343 true SL2.50ch00: 8463134-8491476 Solanum lycopersicum
Solyc00g008680.2 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch00: 8463134-8473133 Solanum lycopersicum
Solyc00g008680.2 10.0kb downstream 10.0kb downstream 28343 true SL2.50ch00: 8473134-8501476 Solanum lycopersicum
Solyc00g008680.2 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch00: 8491477-8501476 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121473201 5263 Asterids View MSA
123743440 5271 Pentapetalae View MSA
122789194 5272 Eudicot View MSA
122043206 5273 Angiosperm View MSA
121344344 5274 Embryophyte View MSA
123380026 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain