Gene : Solyc00g113730.1 S. lycopersicum ITAG2.4
Defline:  (1 of 1) PF12790 - Type VI secretion lipoprotein, VasD, EvfM, TssJ, VC_A0113 (T6SS-SciN) Description:  Type VI secretion lipoprotein VC_A0113 family (AHRD V1 ***- C6M5G3_NEISI); contains Interpro domain(s) IPR017734 Type VI secretion system, lipoprotein VCA0113
Genomic Order:  655 Name:  ? Solyc00g113730.1
Secondary Identifier:  ? PAC:36127995
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc00g113730.1 0.5kb upstream 0.5kb upstream 1004 true SL2.50ch00: 16233855-16234858 Solanum lycopersicum
Solyc00g113730.1 0.5kb upstream 0.5kb upstream 500 false SL2.50ch00: 16234359-16234858 Solanum lycopersicum
Solyc00g113730.1 0.5kb downstream 0.5kb downstream 1004 true SL2.50ch00: 16233355-16234358 Solanum lycopersicum
Solyc00g113730.1 0.5kb downstream 0.5kb downstream 500 false SL2.50ch00: 16233355-16233854 Solanum lycopersicum
Solyc00g113730.1 1.0kb upstream 1.0kb upstream 1504 true SL2.50ch00: 16233855-16235358 Solanum lycopersicum
Solyc00g113730.1 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch00: 16234359-16235358 Solanum lycopersicum
Solyc00g113730.1 1.0kb downstream 1.0kb downstream 1504 true SL2.50ch00: 16232855-16234358 Solanum lycopersicum
Solyc00g113730.1 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch00: 16232855-16233854 Solanum lycopersicum
Solyc00g113730.1 2.0kb upstream 2.0kb upstream 2504 true SL2.50ch00: 16233855-16236358 Solanum lycopersicum
Solyc00g113730.1 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch00: 16234359-16236358 Solanum lycopersicum
Solyc00g113730.1 2.0kb downstream 2.0kb downstream 2504 true SL2.50ch00: 16231855-16234358 Solanum lycopersicum
Solyc00g113730.1 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch00: 16231855-16233854 Solanum lycopersicum
Solyc00g113730.1 5.0kb upstream 5.0kb upstream 5504 true SL2.50ch00: 16233855-16239358 Solanum lycopersicum
Solyc00g113730.1 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch00: 16234359-16239358 Solanum lycopersicum
Solyc00g113730.1 5.0kb downstream 5.0kb downstream 5504 true SL2.50ch00: 16228855-16234358 Solanum lycopersicum
Solyc00g113730.1 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch00: 16228855-16233854 Solanum lycopersicum
Solyc00g113730.1 10.0kb upstream 10.0kb upstream 10504 true SL2.50ch00: 16233855-16244358 Solanum lycopersicum
Solyc00g113730.1 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch00: 16234359-16244358 Solanum lycopersicum
Solyc00g113730.1 10.0kb downstream 10.0kb downstream 10504 true SL2.50ch00: 16223855-16234358 Solanum lycopersicum
Solyc00g113730.1 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch00: 16223855-16233854 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121692056 5273 Angiosperm Singleton cluster - no MSA
121364060 5263 Asterids Singleton cluster - no MSA
123648127 5271 Pentapetalae Singleton cluster - no MSA
122682068 5272 Eudicot Singleton cluster - no MSA
120963889 5274 Embryophyte Singleton cluster - no MSA
123004211 5275 Viridiplantae Singleton cluster - no MSA

0 Rna Seq Expressions

0 Strain