Gene : Solyc00g134820.1 S. lycopersicum ITAG2.4
Defline:  (1 of 1) 3.4.23.43 - Prepilin peptidase Description:  Type IV prepilin leader peptidase (AHRD V1 ***- B9CJS1_9BURK); contains Interpro domain(s) IPR010627 Peptidase A24A, N-terminal
Genomic Order:  711 Name:  ? Solyc00g134820.1
Secondary Identifier:  ? PAC:36128415
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc00g134820.1 0.5kb upstream 0.5kb upstream 1250 true SL2.50ch00: 16920491-16921740 Solanum lycopersicum
Solyc00g134820.1 0.5kb upstream 0.5kb upstream 500 false SL2.50ch00: 16920491-16920990 Solanum lycopersicum
Solyc00g134820.1 0.5kb downstream 0.5kb downstream 1250 true SL2.50ch00: 16920991-16922240 Solanum lycopersicum
Solyc00g134820.1 0.5kb downstream 0.5kb downstream 500 false SL2.50ch00: 16921741-16922240 Solanum lycopersicum
Solyc00g134820.1 1.0kb upstream 1.0kb upstream 1750 true SL2.50ch00: 16919991-16921740 Solanum lycopersicum
Solyc00g134820.1 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch00: 16919991-16920990 Solanum lycopersicum
Solyc00g134820.1 1.0kb downstream 1.0kb downstream 1750 true SL2.50ch00: 16920991-16922740 Solanum lycopersicum
Solyc00g134820.1 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch00: 16921741-16922740 Solanum lycopersicum
Solyc00g134820.1 2.0kb upstream 2.0kb upstream 2750 true SL2.50ch00: 16918991-16921740 Solanum lycopersicum
Solyc00g134820.1 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch00: 16918991-16920990 Solanum lycopersicum
Solyc00g134820.1 2.0kb downstream 2.0kb downstream 2750 true SL2.50ch00: 16920991-16923740 Solanum lycopersicum
Solyc00g134820.1 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch00: 16921741-16923740 Solanum lycopersicum
Solyc00g134820.1 5.0kb upstream 5.0kb upstream 5750 true SL2.50ch00: 16915991-16921740 Solanum lycopersicum
Solyc00g134820.1 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch00: 16915991-16920990 Solanum lycopersicum
Solyc00g134820.1 5.0kb downstream 5.0kb downstream 5750 true SL2.50ch00: 16920991-16926740 Solanum lycopersicum
Solyc00g134820.1 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch00: 16921741-16926740 Solanum lycopersicum
Solyc00g134820.1 10.0kb upstream 10.0kb upstream 10750 true SL2.50ch00: 16910991-16921740 Solanum lycopersicum
Solyc00g134820.1 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch00: 16910991-16920990 Solanum lycopersicum
Solyc00g134820.1 10.0kb downstream 10.0kb downstream 10750 true SL2.50ch00: 16920991-16931740 Solanum lycopersicum
Solyc00g134820.1 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch00: 16921741-16931740 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121692262 5273 Angiosperm Singleton cluster - no MSA
121364303 5263 Asterids Singleton cluster - no MSA
123648334 5271 Pentapetalae Singleton cluster - no MSA
122682275 5272 Eudicot Singleton cluster - no MSA
120964092 5274 Embryophyte Singleton cluster - no MSA
123004412 5275 Viridiplantae Singleton cluster - no MSA

0 Rna Seq Expressions

0 Strain