Gene : Solyc00g050030.1 S. lycopersicum ITAG2.4
Defline:  (1 of 1) PTHR21089:SF2 - SHIKIMATE DEHYDROGENASE Description:  Shikimate 5-dehydrogenase (AHRD V1 *-*- B1YSX4_BURA4); contains Interpro domain(s) IPR011342 Quinate/shikimate 5-dehydrogenase
Genomic Order:  482 Name:  ? Solyc00g050030.1
Secondary Identifier:  ? PAC:36128160
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Slycopersicum ARO-PWY Solanum lycopersicum pathologic  
Slycopersicum PWY-6163 Solanum lycopersicum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc00g050030.1 0.5kb upstream 0.5kb upstream 2882 true SL2.50ch00: 13644954-13647835 Solanum lycopersicum
Solyc00g050030.1 0.5kb upstream 0.5kb upstream 500 false SL2.50ch00: 13644954-13645453 Solanum lycopersicum
Solyc00g050030.1 0.5kb downstream 0.5kb downstream 2882 true SL2.50ch00: 13645454-13648335 Solanum lycopersicum
Solyc00g050030.1 0.5kb downstream 0.5kb downstream 500 false SL2.50ch00: 13647836-13648335 Solanum lycopersicum
Solyc00g050030.1 1.0kb upstream 1.0kb upstream 3382 true SL2.50ch00: 13644454-13647835 Solanum lycopersicum
Solyc00g050030.1 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch00: 13644454-13645453 Solanum lycopersicum
Solyc00g050030.1 1.0kb downstream 1.0kb downstream 3382 true SL2.50ch00: 13645454-13648835 Solanum lycopersicum
Solyc00g050030.1 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch00: 13647836-13648835 Solanum lycopersicum
Solyc00g050030.1 2.0kb upstream 2.0kb upstream 4382 true SL2.50ch00: 13643454-13647835 Solanum lycopersicum
Solyc00g050030.1 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch00: 13643454-13645453 Solanum lycopersicum
Solyc00g050030.1 2.0kb downstream 2.0kb downstream 4382 true SL2.50ch00: 13645454-13649835 Solanum lycopersicum
Solyc00g050030.1 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch00: 13647836-13649835 Solanum lycopersicum
Solyc00g050030.1 5.0kb upstream 5.0kb upstream 7382 true SL2.50ch00: 13640454-13647835 Solanum lycopersicum
Solyc00g050030.1 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch00: 13640454-13645453 Solanum lycopersicum
Solyc00g050030.1 5.0kb downstream 5.0kb downstream 7382 true SL2.50ch00: 13645454-13652835 Solanum lycopersicum
Solyc00g050030.1 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch00: 13647836-13652835 Solanum lycopersicum
Solyc00g050030.1 10.0kb upstream 10.0kb upstream 12382 true SL2.50ch00: 13635454-13647835 Solanum lycopersicum
Solyc00g050030.1 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch00: 13635454-13645453 Solanum lycopersicum
Solyc00g050030.1 10.0kb downstream 10.0kb downstream 12382 true SL2.50ch00: 13645454-13657835 Solanum lycopersicum
Solyc00g050030.1 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch00: 13647836-13657835 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121468327 5263 Asterids View MSA
123743031 5271 Pentapetalae View MSA
122788487 5272 Eudicot View MSA
122045026 5273 Angiosperm View MSA
121345779 5274 Embryophyte View MSA
123427556 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain