Gene : Solyc00g025500.1 S. lycopersicum ITAG2.4
Defline:  (1 of 1) PTHR11751//PTHR11751:SF395 - SUBGROUP I AMINOTRANSFERASE RELATED // SUBFAMILY NOT NAMED Description:  Transcriptional regulator GntR-family (AHRD V1 ***- A9I3B6_BORPD); contains Interpro domain(s) IPR011711 GntR, C-terminal
Genomic Order:  355 Name:  ? Solyc00g025500.1
Secondary Identifier:  ? PAC:36127705
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc00g025500.1 0.5kb upstream 0.5kb upstream 1860 true SL2.50ch00: 12282102-12283961 Solanum lycopersicum
Solyc00g025500.1 0.5kb upstream 0.5kb upstream 500 false SL2.50ch00: 12283462-12283961 Solanum lycopersicum
Solyc00g025500.1 0.5kb downstream 0.5kb downstream 1860 true SL2.50ch00: 12281602-12283461 Solanum lycopersicum
Solyc00g025500.1 0.5kb downstream 0.5kb downstream 500 false SL2.50ch00: 12281602-12282101 Solanum lycopersicum
Solyc00g025500.1 1.0kb upstream 1.0kb upstream 2360 true SL2.50ch00: 12282102-12284461 Solanum lycopersicum
Solyc00g025500.1 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch00: 12283462-12284461 Solanum lycopersicum
Solyc00g025500.1 1.0kb downstream 1.0kb downstream 2360 true SL2.50ch00: 12281102-12283461 Solanum lycopersicum
Solyc00g025500.1 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch00: 12281102-12282101 Solanum lycopersicum
Solyc00g025500.1 2.0kb upstream 2.0kb upstream 3360 true SL2.50ch00: 12282102-12285461 Solanum lycopersicum
Solyc00g025500.1 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch00: 12283462-12285461 Solanum lycopersicum
Solyc00g025500.1 2.0kb downstream 2.0kb downstream 3360 true SL2.50ch00: 12280102-12283461 Solanum lycopersicum
Solyc00g025500.1 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch00: 12280102-12282101 Solanum lycopersicum
Solyc00g025500.1 5.0kb upstream 5.0kb upstream 6360 true SL2.50ch00: 12282102-12288461 Solanum lycopersicum
Solyc00g025500.1 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch00: 12283462-12288461 Solanum lycopersicum
Solyc00g025500.1 5.0kb downstream 5.0kb downstream 6360 true SL2.50ch00: 12277102-12283461 Solanum lycopersicum
Solyc00g025500.1 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch00: 12277102-12282101 Solanum lycopersicum
Solyc00g025500.1 10.0kb upstream 10.0kb upstream 11360 true SL2.50ch00: 12282102-12293461 Solanum lycopersicum
Solyc00g025500.1 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch00: 12283462-12293461 Solanum lycopersicum
Solyc00g025500.1 10.0kb downstream 10.0kb downstream 11360 true SL2.50ch00: 12272102-12283461 Solanum lycopersicum
Solyc00g025500.1 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch00: 12272102-12282101 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121691919 5273 Angiosperm Singleton cluster - no MSA
121363883 5263 Asterids Singleton cluster - no MSA
123647983 5271 Pentapetalae Singleton cluster - no MSA
122681924 5272 Eudicot Singleton cluster - no MSA
120963753 5274 Embryophyte Singleton cluster - no MSA
123004079 5275 Viridiplantae Singleton cluster - no MSA

0 Rna Seq Expressions

0 Strain