Gene : Solyc00g277510.1 S. lycopersicum ITAG2.4
Defline:  (1 of 3) K02703 - photosystem II P680 reaction center D1 protein (psbA) Description:  Photosystem Q(B) protein (AHRD V1 ***- Q95B48_PRUPE); contains Interpro domain(s) IPR000484 Photosynthetic reaction centre, L/M
Genomic Order:  847 Name:  ? Solyc00g277510.1
Secondary Identifier:  ? PAC:36127707
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Slycopersicum PHOTOALL-PWY Solanum lycopersicum pathologic  
Slycopersicum PWY-101 Solanum lycopersicum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc00g277510.1 0.5kb upstream 0.5kb upstream 701 true SL2.50ch00: 20749161-20749861 Solanum lycopersicum
Solyc00g277510.1 0.5kb upstream 0.5kb upstream 500 false SL2.50ch00: 20749362-20749861 Solanum lycopersicum
Solyc00g277510.1 0.5kb downstream 0.5kb downstream 701 true SL2.50ch00: 20748661-20749361 Solanum lycopersicum
Solyc00g277510.1 0.5kb downstream 0.5kb downstream 500 false SL2.50ch00: 20748661-20749160 Solanum lycopersicum
Solyc00g277510.1 1.0kb upstream 1.0kb upstream 1201 true SL2.50ch00: 20749161-20750361 Solanum lycopersicum
Solyc00g277510.1 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch00: 20749362-20750361 Solanum lycopersicum
Solyc00g277510.1 1.0kb downstream 1.0kb downstream 1201 true SL2.50ch00: 20748161-20749361 Solanum lycopersicum
Solyc00g277510.1 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch00: 20748161-20749160 Solanum lycopersicum
Solyc00g277510.1 2.0kb upstream 2.0kb upstream 2201 true SL2.50ch00: 20749161-20751361 Solanum lycopersicum
Solyc00g277510.1 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch00: 20749362-20751361 Solanum lycopersicum
Solyc00g277510.1 2.0kb downstream 2.0kb downstream 2201 true SL2.50ch00: 20747161-20749361 Solanum lycopersicum
Solyc00g277510.1 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch00: 20747161-20749160 Solanum lycopersicum
Solyc00g277510.1 5.0kb upstream 5.0kb upstream 5201 true SL2.50ch00: 20749161-20754361 Solanum lycopersicum
Solyc00g277510.1 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch00: 20749362-20754361 Solanum lycopersicum
Solyc00g277510.1 5.0kb downstream 5.0kb downstream 5201 true SL2.50ch00: 20744161-20749361 Solanum lycopersicum
Solyc00g277510.1 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch00: 20744161-20749160 Solanum lycopersicum
Solyc00g277510.1 10.0kb upstream 10.0kb upstream 10201 true SL2.50ch00: 20749161-20759361 Solanum lycopersicum
Solyc00g277510.1 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch00: 20749362-20759361 Solanum lycopersicum
Solyc00g277510.1 10.0kb downstream 10.0kb downstream 10201 true SL2.50ch00: 20739161-20749361 Solanum lycopersicum
Solyc00g277510.1 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch00: 20739161-20749160 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121363885 5263 Asterids Singleton cluster - no MSA
123750687 5271 Pentapetalae View MSA
122795300 5272 Eudicot View MSA
122047558 5273 Angiosperm View MSA
121350331 5274 Embryophyte View MSA
123381681 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain