Gene : Solyc00g230080.1 S. lycopersicum ITAG2.4
Defline:  (1 of 2) K02706 - photosystem II P680 reaction center D2 protein (psbD) Description:  Photosystem II D2 protein (AHRD V1 ***- D0FXW8_DUNSA); contains Interpro domain(s) IPR000484 Photosynthetic reaction centre, L/M
Genomic Order:  816 Name:  ? Solyc00g230080.1
Secondary Identifier:  ? PAC:36127672
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Slycopersicum PHOTOALL-PWY Solanum lycopersicum pathologic  
Slycopersicum PWY-101 Solanum lycopersicum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc00g230080.1 0.5kb upstream 0.5kb upstream 857 true SL2.50ch00: 19614704-19615560 Solanum lycopersicum
Solyc00g230080.1 0.5kb upstream 0.5kb upstream 500 false SL2.50ch00: 19615061-19615560 Solanum lycopersicum
Solyc00g230080.1 0.5kb downstream 0.5kb downstream 857 true SL2.50ch00: 19614204-19615060 Solanum lycopersicum
Solyc00g230080.1 0.5kb downstream 0.5kb downstream 500 false SL2.50ch00: 19614204-19614703 Solanum lycopersicum
Solyc00g230080.1 1.0kb upstream 1.0kb upstream 1357 true SL2.50ch00: 19614704-19616060 Solanum lycopersicum
Solyc00g230080.1 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch00: 19615061-19616060 Solanum lycopersicum
Solyc00g230080.1 1.0kb downstream 1.0kb downstream 1357 true SL2.50ch00: 19613704-19615060 Solanum lycopersicum
Solyc00g230080.1 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch00: 19613704-19614703 Solanum lycopersicum
Solyc00g230080.1 2.0kb upstream 2.0kb upstream 2357 true SL2.50ch00: 19614704-19617060 Solanum lycopersicum
Solyc00g230080.1 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch00: 19615061-19617060 Solanum lycopersicum
Solyc00g230080.1 2.0kb downstream 2.0kb downstream 2357 true SL2.50ch00: 19612704-19615060 Solanum lycopersicum
Solyc00g230080.1 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch00: 19612704-19614703 Solanum lycopersicum
Solyc00g230080.1 5.0kb upstream 5.0kb upstream 5357 true SL2.50ch00: 19614704-19620060 Solanum lycopersicum
Solyc00g230080.1 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch00: 19615061-19620060 Solanum lycopersicum
Solyc00g230080.1 5.0kb downstream 5.0kb downstream 5357 true SL2.50ch00: 19609704-19615060 Solanum lycopersicum
Solyc00g230080.1 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch00: 19609704-19614703 Solanum lycopersicum
Solyc00g230080.1 10.0kb upstream 10.0kb upstream 10357 true SL2.50ch00: 19614704-19625060 Solanum lycopersicum
Solyc00g230080.1 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch00: 19615061-19625060 Solanum lycopersicum
Solyc00g230080.1 10.0kb downstream 10.0kb downstream 10357 true SL2.50ch00: 19604704-19615060 Solanum lycopersicum
Solyc00g230080.1 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch00: 19604704-19614703 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121481186 5263 Asterids View MSA
123753555 5271 Pentapetalae View MSA
122797414 5272 Eudicot View MSA
122047558 5273 Angiosperm View MSA
121350331 5274 Embryophyte View MSA
123381681 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain